Experiment: NAG as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1388 and HP15_1389 overlap by 1 nucleotides HP15_1389 and HP15_1390 are separated by 164 nucleotides
HP15_1388: HP15_1388 - iron-containing alcohol dehydrogenase, at 1,464,161 to 1,465,348
_1388
HP15_1389: HP15_1389 - conserved hypothetical protein, at 1,465,348 to 1,465,902
_1389
HP15_1390: HP15_1390 - peptidase M48, Ste24p, at 1,466,067 to 1,467,344
_1390
Position (kb)
1465
1466 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1464.403 kb on + strand, within HP15_1388 at 1464.485 kb on + strand, within HP15_1388 at 1464.599 kb on + strand, within HP15_1388 at 1464.639 kb on - strand, within HP15_1388 at 1464.731 kb on + strand, within HP15_1388 at 1464.763 kb on - strand, within HP15_1388 at 1464.799 kb on - strand, within HP15_1388 at 1464.901 kb on + strand, within HP15_1388 at 1464.909 kb on - strand, within HP15_1388 at 1464.962 kb on - strand, within HP15_1388 at 1464.972 kb on - strand, within HP15_1388 at 1465.030 kb on - strand, within HP15_1388 at 1465.257 kb on + strand at 1465.282 kb on + strand at 1465.290 kb on - strand at 1465.454 kb on - strand, within HP15_1389 at 1465.506 kb on - strand, within HP15_1389 at 1465.689 kb on - strand, within HP15_1389 at 1465.707 kb on + strand, within HP15_1389 at 1465.715 kb on - strand, within HP15_1389 at 1465.748 kb on + strand, within HP15_1389 at 1465.804 kb on - strand, within HP15_1389 at 1466.022 kb on + strand at 1466.032 kb on - strand at 1466.139 kb on - strand at 1466.171 kb on + strand at 1466.235 kb on + strand, within HP15_1390 at 1466.278 kb on - strand, within HP15_1390 at 1466.458 kb on + strand, within HP15_1390 at 1466.537 kb on - strand, within HP15_1390 at 1466.589 kb on + strand, within HP15_1390 at 1466.638 kb on + strand, within HP15_1390 at 1466.638 kb on + strand, within HP15_1390 at 1466.724 kb on + strand, within HP15_1390 at 1466.830 kb on + strand, within HP15_1390 at 1466.895 kb on + strand, within HP15_1390
Per-strain Table
Position Strand Gene LocusTag Fraction NAG as (N) remove 1,464,403 + HP15_1388 0.20 +0.2 1,464,485 + HP15_1388 0.27 +0.1 1,464,599 + HP15_1388 0.37 +1.6 1,464,639 - HP15_1388 0.40 +1.8 1,464,731 + HP15_1388 0.48 +2.2 1,464,763 - HP15_1388 0.51 -0.6 1,464,799 - HP15_1388 0.54 -0.6 1,464,901 + HP15_1388 0.62 +1.6 1,464,909 - HP15_1388 0.63 -0.7 1,464,962 - HP15_1388 0.67 +0.6 1,464,972 - HP15_1388 0.68 +2.4 1,465,030 - HP15_1388 0.73 +2.0 1,465,257 + +1.9 1,465,282 + +0.3 1,465,290 - -0.3 1,465,454 - HP15_1389 0.19 +1.8 1,465,506 - HP15_1389 0.28 -0.3 1,465,689 - HP15_1389 0.61 -0.2 1,465,707 + HP15_1389 0.65 +1.7 1,465,715 - HP15_1389 0.66 +1.0 1,465,748 + HP15_1389 0.72 +1.7 1,465,804 - HP15_1389 0.82 -0.3 1,466,022 + -0.7 1,466,032 - -0.7 1,466,139 - +1.5 1,466,171 + -0.5 1,466,235 + HP15_1390 0.13 +0.8 1,466,278 - HP15_1390 0.17 +0.7 1,466,458 + HP15_1390 0.31 +1.8 1,466,537 - HP15_1390 0.37 +3.5 1,466,589 + HP15_1390 0.41 +1.1 1,466,638 + HP15_1390 0.45 +0.8 1,466,638 + HP15_1390 0.45 -0.1 1,466,724 + HP15_1390 0.51 -0.7 1,466,830 + HP15_1390 0.60 -2.1 1,466,895 + HP15_1390 0.65 -0.7
Or see this region's nucleotide sequence