Experiment: NAG as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1102 and HP15_1103 are separated by 844 nucleotides HP15_1103 and HP15_1104 are separated by 320 nucleotides
HP15_1102: HP15_1102 - integrase catalytic region, at 1,128,097 to 1,128,906
_1102
HP15_1103: HP15_1103 - protein containing Helix-turn-helix, AraC domain, at 1,129,751 to 1,130,716
_1103
HP15_1104: HP15_1104 - transposase, IS4 family protein-like protein, at 1,131,037 to 1,131,600
_1104
Position (kb)
1129
1130
1131 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 1128.798 kb on + strand, within HP15_1102 at 1128.806 kb on - strand, within HP15_1102 at 1128.806 kb on - strand, within HP15_1102 at 1128.875 kb on + strand at 1128.875 kb on + strand at 1128.875 kb on + strand at 1128.883 kb on - strand at 1128.883 kb on - strand at 1128.883 kb on - strand at 1128.945 kb on - strand at 1129.029 kb on + strand at 1129.064 kb on - strand at 1129.069 kb on - strand at 1129.216 kb on + strand at 1129.244 kb on + strand at 1129.267 kb on + strand at 1129.275 kb on - strand at 1129.275 kb on - strand at 1129.340 kb on - strand at 1129.389 kb on - strand at 1129.391 kb on + strand at 1129.480 kb on + strand at 1129.490 kb on + strand at 1129.493 kb on + strand at 1129.498 kb on + strand at 1129.498 kb on + strand at 1129.500 kb on + strand at 1129.500 kb on + strand at 1129.534 kb on + strand at 1129.534 kb on + strand at 1129.534 kb on + strand at 1129.542 kb on - strand at 1129.542 kb on - strand at 1129.542 kb on - strand at 1129.601 kb on + strand at 1129.601 kb on + strand at 1129.601 kb on + strand at 1129.854 kb on - strand, within HP15_1103 at 1129.864 kb on + strand, within HP15_1103 at 1129.864 kb on + strand, within HP15_1103 at 1130.340 kb on + strand, within HP15_1103 at 1130.506 kb on + strand, within HP15_1103 at 1130.651 kb on + strand at 1130.843 kb on + strand at 1130.853 kb on + strand at 1130.870 kb on + strand at 1130.986 kb on - strand at 1130.999 kb on + strand at 1131.035 kb on - strand at 1131.046 kb on + strand at 1131.054 kb on - strand at 1131.091 kb on - strand at 1131.091 kb on - strand at 1131.180 kb on + strand, within HP15_1104 at 1131.298 kb on + strand, within HP15_1104 at 1131.342 kb on - strand, within HP15_1104 at 1131.346 kb on + strand, within HP15_1104 at 1131.384 kb on + strand, within HP15_1104 at 1131.427 kb on + strand, within HP15_1104 at 1131.505 kb on - strand, within HP15_1104 at 1131.630 kb on + strand at 1131.640 kb on + strand at 1131.682 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NAG as (N) remove 1,128,798 + HP15_1102 0.87 +2.1 1,128,806 - HP15_1102 0.88 +2.3 1,128,806 - HP15_1102 0.88 +1.7 1,128,875 + +0.9 1,128,875 + -0.0 1,128,875 + +0.1 1,128,883 - +2.3 1,128,883 - +0.4 1,128,883 - +0.9 1,128,945 - +0.4 1,129,029 + -0.1 1,129,064 - +1.8 1,129,069 - +2.2 1,129,216 + +0.1 1,129,244 + -0.3 1,129,267 + +0.4 1,129,275 - -0.1 1,129,275 - -0.4 1,129,340 - +2.2 1,129,389 - -0.6 1,129,391 + +3.8 1,129,480 + +0.1 1,129,490 + +2.6 1,129,493 + +2.2 1,129,498 + +1.7 1,129,498 + -0.5 1,129,500 + +0.2 1,129,500 + +2.2 1,129,534 + -0.6 1,129,534 + -1.4 1,129,534 + -0.5 1,129,542 - -1.2 1,129,542 - +0.2 1,129,542 - -0.4 1,129,601 + +0.1 1,129,601 + +0.7 1,129,601 + +2.9 1,129,854 - HP15_1103 0.11 -0.9 1,129,864 + HP15_1103 0.12 +0.3 1,129,864 + HP15_1103 0.12 +2.1 1,130,340 + HP15_1103 0.61 -1.0 1,130,506 + HP15_1103 0.78 +0.2 1,130,651 + +0.9 1,130,843 + +0.1 1,130,853 + -0.3 1,130,870 + +0.6 1,130,986 - +0.7 1,130,999 + +0.6 1,131,035 - -0.3 1,131,046 + -0.2 1,131,054 - -0.5 1,131,091 - -0.5 1,131,091 - +3.4 1,131,180 + HP15_1104 0.25 +1.7 1,131,298 + HP15_1104 0.46 +0.2 1,131,342 - HP15_1104 0.54 +2.3 1,131,346 + HP15_1104 0.55 +2.5 1,131,384 + HP15_1104 0.62 -1.1 1,131,427 + HP15_1104 0.69 +1.7 1,131,505 - HP15_1104 0.83 +1.8 1,131,630 + +2.0 1,131,640 + +2.1 1,131,682 - +0.4
Or see this region's nucleotide sequence