Strain Fitness in Marinobacter adhaerens HP15 around HP15_1085

Experiment: NAG as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1083 and HP15_1084 are separated by 312 nucleotidesHP15_1084 and HP15_1085 are separated by 208 nucleotidesHP15_1085 and HP15_1086 are separated by 85 nucleotidesHP15_1086 and HP15_1087 are separated by 285 nucleotides HP15_1083: HP15_1083 - conserved hypothetical protein, at 1,111,874 to 1,112,836 _1083 HP15_1084: HP15_1084 - hypothetical protein, at 1,113,149 to 1,113,271 _1084 HP15_1085: HP15_1085 - conserved hypothetical protein, at 1,113,480 to 1,113,923 _1085 HP15_1086: HP15_1086 - hypothetical protein, at 1,114,009 to 1,114,248 _1086 HP15_1087: HP15_1087 - prophage CP4-57 regulatory, at 1,114,534 to 1,114,761 _1087 Position (kb) 1113 1114Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1112.642 kb on - strand, within HP15_1083at 1112.698 kb on + strand, within HP15_1083at 1113.088 kb on + strandat 1113.099 kb on + strandat 1113.107 kb on - strandat 1113.114 kb on + strandat 1113.137 kb on + strandat 1113.137 kb on + strandat 1113.140 kb on - strandat 1113.140 kb on - strandat 1113.141 kb on + strandat 1113.326 kb on - strandat 1113.456 kb on + strandat 1113.456 kb on + strandat 1113.464 kb on - strandat 1113.464 kb on - strandat 1113.474 kb on - strandat 1113.515 kb on + strandat 1113.523 kb on - strandat 1113.636 kb on + strand, within HP15_1085at 1113.672 kb on - strand, within HP15_1085at 1113.714 kb on - strand, within HP15_1085at 1113.746 kb on - strand, within HP15_1085at 1113.762 kb on - strand, within HP15_1085at 1113.769 kb on - strand, within HP15_1085at 1113.810 kb on + strand, within HP15_1085at 1113.824 kb on + strand, within HP15_1085at 1113.824 kb on + strand, within HP15_1085at 1113.824 kb on + strand, within HP15_1085at 1113.824 kb on + strand, within HP15_1085at 1113.832 kb on - strand, within HP15_1085at 1113.850 kb on - strand, within HP15_1085at 1113.908 kb on + strandat 1113.911 kb on - strandat 1113.933 kb on - strandat 1114.051 kb on - strand, within HP15_1086at 1114.061 kb on - strand, within HP15_1086at 1114.372 kb on - strandat 1114.501 kb on + strandat 1114.501 kb on - strandat 1114.541 kb on + strandat 1114.610 kb on - strand, within HP15_1087at 1114.658 kb on - strand, within HP15_1087at 1114.660 kb on + strand, within HP15_1087at 1114.872 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG as (N)
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1,112,642 - HP15_1083 0.80 +1.8
1,112,698 + HP15_1083 0.86 -1.1
1,113,088 + +0.6
1,113,099 + -1.2
1,113,107 - +2.1
1,113,114 + -1.0
1,113,137 + -2.1
1,113,137 + -0.7
1,113,140 - -0.9
1,113,140 - -0.8
1,113,141 + +2.4
1,113,326 - +1.1
1,113,456 + +0.0
1,113,456 + -1.1
1,113,464 - +1.0
1,113,464 - +0.5
1,113,474 - +2.1
1,113,515 + -0.6
1,113,523 - -1.2
1,113,636 + HP15_1085 0.35 +2.6
1,113,672 - HP15_1085 0.43 +0.0
1,113,714 - HP15_1085 0.53 -0.6
1,113,746 - HP15_1085 0.60 +2.1
1,113,762 - HP15_1085 0.64 +2.4
1,113,769 - HP15_1085 0.65 +0.2
1,113,810 + HP15_1085 0.74 +3.0
1,113,824 + HP15_1085 0.77 -0.6
1,113,824 + HP15_1085 0.77 -0.7
1,113,824 + HP15_1085 0.77 +0.8
1,113,824 + HP15_1085 0.77 -0.9
1,113,832 - HP15_1085 0.79 +2.0
1,113,850 - HP15_1085 0.83 -0.8
1,113,908 + +2.5
1,113,911 - -0.8
1,113,933 - +2.4
1,114,051 - HP15_1086 0.17 +2.0
1,114,061 - HP15_1086 0.22 +0.1
1,114,372 - +2.4
1,114,501 + -0.2
1,114,501 - +0.8
1,114,541 + -0.2
1,114,610 - HP15_1087 0.33 +1.5
1,114,658 - HP15_1087 0.54 +0.1
1,114,660 + HP15_1087 0.55 -1.5
1,114,872 - -0.4

Or see this region's nucleotide sequence