Experiment: NAG as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1083 and HP15_1084 are separated by 312 nucleotides HP15_1084 and HP15_1085 are separated by 208 nucleotides HP15_1085 and HP15_1086 are separated by 85 nucleotides HP15_1086 and HP15_1087 are separated by 285 nucleotides
HP15_1083: HP15_1083 - conserved hypothetical protein, at 1,111,874 to 1,112,836
_1083
HP15_1084: HP15_1084 - hypothetical protein, at 1,113,149 to 1,113,271
_1084
HP15_1085: HP15_1085 - conserved hypothetical protein, at 1,113,480 to 1,113,923
_1085
HP15_1086: HP15_1086 - hypothetical protein, at 1,114,009 to 1,114,248
_1086
HP15_1087: HP15_1087 - prophage CP4-57 regulatory, at 1,114,534 to 1,114,761
_1087
Position (kb)
1113
1114 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1112.642 kb on - strand, within HP15_1083 at 1112.698 kb on + strand, within HP15_1083 at 1113.088 kb on + strand at 1113.099 kb on + strand at 1113.107 kb on - strand at 1113.114 kb on + strand at 1113.137 kb on + strand at 1113.137 kb on + strand at 1113.140 kb on - strand at 1113.140 kb on - strand at 1113.141 kb on + strand at 1113.326 kb on - strand at 1113.456 kb on + strand at 1113.456 kb on + strand at 1113.464 kb on - strand at 1113.464 kb on - strand at 1113.474 kb on - strand at 1113.515 kb on + strand at 1113.523 kb on - strand at 1113.636 kb on + strand, within HP15_1085 at 1113.672 kb on - strand, within HP15_1085 at 1113.714 kb on - strand, within HP15_1085 at 1113.746 kb on - strand, within HP15_1085 at 1113.762 kb on - strand, within HP15_1085 at 1113.769 kb on - strand, within HP15_1085 at 1113.810 kb on + strand, within HP15_1085 at 1113.824 kb on + strand, within HP15_1085 at 1113.824 kb on + strand, within HP15_1085 at 1113.824 kb on + strand, within HP15_1085 at 1113.824 kb on + strand, within HP15_1085 at 1113.832 kb on - strand, within HP15_1085 at 1113.850 kb on - strand, within HP15_1085 at 1113.908 kb on + strand at 1113.911 kb on - strand at 1113.933 kb on - strand at 1114.051 kb on - strand, within HP15_1086 at 1114.061 kb on - strand, within HP15_1086 at 1114.372 kb on - strand at 1114.501 kb on + strand at 1114.501 kb on - strand at 1114.541 kb on + strand at 1114.610 kb on - strand, within HP15_1087 at 1114.658 kb on - strand, within HP15_1087 at 1114.660 kb on + strand, within HP15_1087 at 1114.872 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NAG as (N) remove 1,112,642 - HP15_1083 0.80 +1.8 1,112,698 + HP15_1083 0.86 -1.1 1,113,088 + +0.6 1,113,099 + -1.2 1,113,107 - +2.1 1,113,114 + -1.0 1,113,137 + -2.1 1,113,137 + -0.7 1,113,140 - -0.9 1,113,140 - -0.8 1,113,141 + +2.4 1,113,326 - +1.1 1,113,456 + +0.0 1,113,456 + -1.1 1,113,464 - +1.0 1,113,464 - +0.5 1,113,474 - +2.1 1,113,515 + -0.6 1,113,523 - -1.2 1,113,636 + HP15_1085 0.35 +2.6 1,113,672 - HP15_1085 0.43 +0.0 1,113,714 - HP15_1085 0.53 -0.6 1,113,746 - HP15_1085 0.60 +2.1 1,113,762 - HP15_1085 0.64 +2.4 1,113,769 - HP15_1085 0.65 +0.2 1,113,810 + HP15_1085 0.74 +3.0 1,113,824 + HP15_1085 0.77 -0.6 1,113,824 + HP15_1085 0.77 -0.7 1,113,824 + HP15_1085 0.77 +0.8 1,113,824 + HP15_1085 0.77 -0.9 1,113,832 - HP15_1085 0.79 +2.0 1,113,850 - HP15_1085 0.83 -0.8 1,113,908 + +2.5 1,113,911 - -0.8 1,113,933 - +2.4 1,114,051 - HP15_1086 0.17 +2.0 1,114,061 - HP15_1086 0.22 +0.1 1,114,372 - +2.4 1,114,501 + -0.2 1,114,501 - +0.8 1,114,541 + -0.2 1,114,610 - HP15_1087 0.33 +1.5 1,114,658 - HP15_1087 0.54 +0.1 1,114,660 + HP15_1087 0.55 -1.5 1,114,872 - -0.4
Or see this region's nucleotide sequence