Experiment: NAG as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1009 and HP15_1010 are separated by 419 nucleotides HP15_1010 and HP15_1011 overlap by 14 nucleotides
HP15_1009: HP15_1009 - acyl-CoA thiolase, at 1,019,744 to 1,020,937
_1009
HP15_1010: HP15_1010 - sodium-dependent transporter, NSS family protein, at 1,021,357 to 1,022,694
_1010
HP15_1011: HP15_1011 - two component, sigma54 specific, transcriptional regulator, Fis family, at 1,022,681 to 1,024,597
_1011
Position (kb)
1021
1022
1023 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1020.421 kb on - strand, within HP15_1009 at 1020.530 kb on - strand, within HP15_1009 at 1020.577 kb on - strand, within HP15_1009 at 1020.613 kb on - strand, within HP15_1009 at 1020.624 kb on + strand, within HP15_1009 at 1020.632 kb on - strand, within HP15_1009 at 1020.791 kb on + strand, within HP15_1009 at 1020.849 kb on + strand at 1020.871 kb on - strand at 1020.889 kb on + strand at 1020.915 kb on - strand at 1020.969 kb on - strand at 1021.129 kb on + strand at 1021.312 kb on + strand at 1021.597 kb on + strand, within HP15_1010 at 1021.631 kb on - strand, within HP15_1010 at 1021.684 kb on - strand, within HP15_1010 at 1021.922 kb on + strand, within HP15_1010 at 1022.042 kb on - strand, within HP15_1010 at 1022.083 kb on + strand, within HP15_1010 at 1022.083 kb on + strand, within HP15_1010 at 1022.083 kb on + strand, within HP15_1010 at 1022.091 kb on - strand, within HP15_1010 at 1022.311 kb on - strand, within HP15_1010 at 1022.490 kb on - strand, within HP15_1010 at 1022.566 kb on + strand at 1022.574 kb on - strand at 1022.593 kb on - strand at 1022.695 kb on + strand at 1022.795 kb on - strand at 1022.809 kb on + strand at 1022.817 kb on - strand at 1022.967 kb on - strand, within HP15_1011 at 1023.072 kb on + strand, within HP15_1011 at 1023.072 kb on - strand, within HP15_1011 at 1023.234 kb on - strand, within HP15_1011 at 1023.320 kb on - strand, within HP15_1011 at 1023.388 kb on + strand, within HP15_1011 at 1023.388 kb on + strand, within HP15_1011 at 1023.432 kb on + strand, within HP15_1011 at 1023.678 kb on + strand, within HP15_1011 at 1023.681 kb on - strand, within HP15_1011
Per-strain Table
Position Strand Gene LocusTag Fraction NAG as (N) remove 1,020,421 - HP15_1009 0.57 +0.8 1,020,530 - HP15_1009 0.66 +1.5 1,020,577 - HP15_1009 0.70 -1.0 1,020,613 - HP15_1009 0.73 +1.0 1,020,624 + HP15_1009 0.74 -0.2 1,020,632 - HP15_1009 0.74 +2.0 1,020,791 + HP15_1009 0.88 -1.0 1,020,849 + +1.1 1,020,871 - -0.4 1,020,889 + +0.2 1,020,915 - -0.3 1,020,969 - +0.2 1,021,129 + -0.8 1,021,312 + +0.0 1,021,597 + HP15_1010 0.18 +1.5 1,021,631 - HP15_1010 0.20 +0.8 1,021,684 - HP15_1010 0.24 +1.6 1,021,922 + HP15_1010 0.42 -1.1 1,022,042 - HP15_1010 0.51 -0.1 1,022,083 + HP15_1010 0.54 +2.6 1,022,083 + HP15_1010 0.54 +2.5 1,022,083 + HP15_1010 0.54 -0.3 1,022,091 - HP15_1010 0.55 -1.3 1,022,311 - HP15_1010 0.71 +2.6 1,022,490 - HP15_1010 0.85 -1.1 1,022,566 + -0.0 1,022,574 - +1.9 1,022,593 - +2.7 1,022,695 + -0.8 1,022,795 - -0.2 1,022,809 + +1.8 1,022,817 - +1.0 1,022,967 - HP15_1011 0.15 -0.5 1,023,072 + HP15_1011 0.20 +2.0 1,023,072 - HP15_1011 0.20 -0.2 1,023,234 - HP15_1011 0.29 -0.3 1,023,320 - HP15_1011 0.33 -2.3 1,023,388 + HP15_1011 0.37 -0.3 1,023,388 + HP15_1011 0.37 +0.1 1,023,432 + HP15_1011 0.39 +1.3 1,023,678 + HP15_1011 0.52 +1.3 1,023,681 - HP15_1011 0.52 +0.8
Or see this region's nucleotide sequence