Strain Fitness in Marinobacter adhaerens HP15 around HP15_1010

Experiment: NAG as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1009 and HP15_1010 are separated by 419 nucleotidesHP15_1010 and HP15_1011 overlap by 14 nucleotides HP15_1009: HP15_1009 - acyl-CoA thiolase, at 1,019,744 to 1,020,937 _1009 HP15_1010: HP15_1010 - sodium-dependent transporter, NSS family protein, at 1,021,357 to 1,022,694 _1010 HP15_1011: HP15_1011 - two component, sigma54 specific, transcriptional regulator, Fis family, at 1,022,681 to 1,024,597 _1011 Position (kb) 1021 1022 1023Strain fitness (log2 ratio) -2 -1 0 1 2at 1020.421 kb on - strand, within HP15_1009at 1020.530 kb on - strand, within HP15_1009at 1020.577 kb on - strand, within HP15_1009at 1020.613 kb on - strand, within HP15_1009at 1020.624 kb on + strand, within HP15_1009at 1020.632 kb on - strand, within HP15_1009at 1020.791 kb on + strand, within HP15_1009at 1020.849 kb on + strandat 1020.871 kb on - strandat 1020.889 kb on + strandat 1020.915 kb on - strandat 1020.969 kb on - strandat 1021.129 kb on + strandat 1021.312 kb on + strandat 1021.597 kb on + strand, within HP15_1010at 1021.631 kb on - strand, within HP15_1010at 1021.684 kb on - strand, within HP15_1010at 1021.922 kb on + strand, within HP15_1010at 1022.042 kb on - strand, within HP15_1010at 1022.083 kb on + strand, within HP15_1010at 1022.083 kb on + strand, within HP15_1010at 1022.083 kb on + strand, within HP15_1010at 1022.091 kb on - strand, within HP15_1010at 1022.311 kb on - strand, within HP15_1010at 1022.490 kb on - strand, within HP15_1010at 1022.566 kb on + strandat 1022.574 kb on - strandat 1022.593 kb on - strandat 1022.695 kb on + strandat 1022.795 kb on - strandat 1022.809 kb on + strandat 1022.817 kb on - strandat 1022.967 kb on - strand, within HP15_1011at 1023.072 kb on + strand, within HP15_1011at 1023.072 kb on - strand, within HP15_1011at 1023.234 kb on - strand, within HP15_1011at 1023.320 kb on - strand, within HP15_1011at 1023.388 kb on + strand, within HP15_1011at 1023.388 kb on + strand, within HP15_1011at 1023.432 kb on + strand, within HP15_1011at 1023.678 kb on + strand, within HP15_1011at 1023.681 kb on - strand, within HP15_1011

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG as (N)
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1,020,421 - HP15_1009 0.57 +0.8
1,020,530 - HP15_1009 0.66 +1.5
1,020,577 - HP15_1009 0.70 -1.0
1,020,613 - HP15_1009 0.73 +1.0
1,020,624 + HP15_1009 0.74 -0.2
1,020,632 - HP15_1009 0.74 +2.0
1,020,791 + HP15_1009 0.88 -1.0
1,020,849 + +1.1
1,020,871 - -0.4
1,020,889 + +0.2
1,020,915 - -0.3
1,020,969 - +0.2
1,021,129 + -0.8
1,021,312 + +0.0
1,021,597 + HP15_1010 0.18 +1.5
1,021,631 - HP15_1010 0.20 +0.8
1,021,684 - HP15_1010 0.24 +1.6
1,021,922 + HP15_1010 0.42 -1.1
1,022,042 - HP15_1010 0.51 -0.1
1,022,083 + HP15_1010 0.54 +2.6
1,022,083 + HP15_1010 0.54 +2.5
1,022,083 + HP15_1010 0.54 -0.3
1,022,091 - HP15_1010 0.55 -1.3
1,022,311 - HP15_1010 0.71 +2.6
1,022,490 - HP15_1010 0.85 -1.1
1,022,566 + -0.0
1,022,574 - +1.9
1,022,593 - +2.7
1,022,695 + -0.8
1,022,795 - -0.2
1,022,809 + +1.8
1,022,817 - +1.0
1,022,967 - HP15_1011 0.15 -0.5
1,023,072 + HP15_1011 0.20 +2.0
1,023,072 - HP15_1011 0.20 -0.2
1,023,234 - HP15_1011 0.29 -0.3
1,023,320 - HP15_1011 0.33 -2.3
1,023,388 + HP15_1011 0.37 -0.3
1,023,388 + HP15_1011 0.37 +0.1
1,023,432 + HP15_1011 0.39 +1.3
1,023,678 + HP15_1011 0.52 +1.3
1,023,681 - HP15_1011 0.52 +0.8

Or see this region's nucleotide sequence