Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2825

Experiment: MoYLS4 with Chloramphenicol 0.003125 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_2824 and DvMF_2825 are separated by 59 nucleotidesDvMF_2825 and DvMF_2826 are separated by 186 nucleotidesDvMF_2826 and DvMF_2827 are separated by 39 nucleotides DvMF_2824: DvMF_2824 - rod shape-determining protein RodA (RefSeq), at 3,570,477 to 3,571,592 _2824 DvMF_2825: DvMF_2825 - protein of unknown function DUF583 (RefSeq), at 3,571,652 to 3,571,993 _2825 DvMF_2826: DvMF_2826 - H+transporting two-sector ATPase B/B' subunit (RefSeq), at 3,572,180 to 3,572,596 _2826 DvMF_2827: DvMF_2827 - H+transporting two-sector ATPase B/B' subunit (RefSeq), at 3,572,636 to 3,573,205 _2827 Position (kb) 3571 3572Strain fitness (log2 ratio) -1 0 1at 3571.700 kb on - strand, within DvMF_2825at 3571.885 kb on - strand, within DvMF_2825

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Chloramphenicol 0.003125 mg/ml
remove
3,571,700 - DvMF_2825 0.14 -0.5
3,571,885 - DvMF_2825 0.68 -0.5

Or see this region's nucleotide sequence