Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2721

Experiment: MoYLS4 with Chloramphenicol 0.003125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2719 and DvMF_2720 overlap by 4 nucleotidesDvMF_2720 and DvMF_2721 are separated by 243 nucleotidesDvMF_2721 and DvMF_2722 overlap by 11 nucleotides DvMF_2719: DvMF_2719 - competence protein ComM, putative (RefSeq), at 3,443,316 to 3,444,026 _2719 DvMF_2720: DvMF_2720 - phosphatidylserine/phosphatidylglycerophosphate related protein (RefSeq), at 3,444,023 to 3,444,577 _2720 DvMF_2721: DvMF_2721 - hypothetical protein (RefSeq), at 3,444,821 to 3,445,171 _2721 DvMF_2722: DvMF_2722 - Radical SAM domain protein (RefSeq), at 3,445,161 to 3,446,624 _2722 Position (kb) 3444 3445 3446Strain fitness (log2 ratio) -1 0 1at 3443.882 kb on + strand, within DvMF_2719at 3443.890 kb on - strand, within DvMF_2719at 3444.095 kb on + strand, within DvMF_2720at 3444.109 kb on - strand, within DvMF_2720at 3444.116 kb on - strand, within DvMF_2720at 3444.209 kb on + strand, within DvMF_2720at 3444.209 kb on + strand, within DvMF_2720at 3444.387 kb on + strand, within DvMF_2720at 3444.388 kb on - strand, within DvMF_2720

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Chloramphenicol 0.003125 mg/ml
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3,443,882 + DvMF_2719 0.80 -0.2
3,443,890 - DvMF_2719 0.81 +0.1
3,444,095 + DvMF_2720 0.13 -0.2
3,444,109 - DvMF_2720 0.15 -0.2
3,444,116 - DvMF_2720 0.17 -0.2
3,444,209 + DvMF_2720 0.34 -0.0
3,444,209 + DvMF_2720 0.34 -0.4
3,444,387 + DvMF_2720 0.66 -0.0
3,444,388 - DvMF_2720 0.66 +0.4

Or see this region's nucleotide sequence