Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2590
Experiment: MoYLS4 with Chloramphenicol 0.003125 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | MoYLS4 with Chloramphenicol 0.003125 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,274,189 | - | DvMF_2589 | 0.53 | -0.4 | |
3,274,282 | + | DvMF_2589 | 0.66 | -0.4 | |
3,274,331 | + | DvMF_2589 | 0.72 | -0.4 | |
3,274,415 | + | DvMF_2589 | 0.84 | -0.3 | |
3,274,433 | + | DvMF_2589 | 0.86 | -0.5 | |
3,274,433 | + | DvMF_2589 | 0.86 | +0.2 | |
3,274,433 | + | DvMF_2589 | 0.86 | -0.6 | |
3,274,441 | - | DvMF_2589 | 0.87 | -0.1 | |
3,274,523 | - | -0.2 | |||
3,274,603 | - | -0.3 | |||
3,274,653 | - | -0.1 | |||
3,274,754 | - | -0.4 | |||
3,274,885 | + | -0.2 | |||
3,275,145 | + | -0.4 | |||
3,275,145 | + | -0.4 | |||
3,275,145 | + | -0.5 | |||
3,275,317 | - | DvMF_2590 | 0.48 | -0.8 | |
3,275,591 | - | -0.1 | |||
3,275,595 | - | -0.3 | |||
3,275,687 | + | -0.8 | |||
3,275,695 | - | -0.5 | |||
3,275,736 | + | DvMF_2591 | 0.10 | -0.1 | |
3,275,812 | + | DvMF_2591 | 0.27 | -0.4 | |
3,275,869 | + | DvMF_2591 | 0.40 | +0.4 | |
3,276,448 | + | DvMF_2592 | 0.51 | -0.3 |
Or see this region's nucleotide sequence