Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2590

Experiment: MoYLS4 with Chloramphenicol 0.003125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2589 and DvMF_2590 are separated by 595 nucleotidesDvMF_2590 and DvMF_2591 are separated by 165 nucleotidesDvMF_2591 and DvMF_2592 are separated by 109 nucleotides DvMF_2589: DvMF_2589 - Lysine exporter protein (LYSE/YGGA) (RefSeq), at 3,273,801 to 3,274,532 _2589 DvMF_2590: DvMF_2590 - response regulator receiver protein (RefSeq), at 3,275,128 to 3,275,523 _2590 DvMF_2591: DvMF_2591 - transcriptional regulator, BadM/Rrf2 family (RefSeq), at 3,275,689 to 3,276,141 _2591 DvMF_2592: DvMF_2592 - two component transcriptional regulator, Fis family (RefSeq), at 3,276,251 to 3,276,637 _2592 Position (kb) 3275 3276Strain fitness (log2 ratio) -1 0 1at 3274.189 kb on - strand, within DvMF_2589at 3274.282 kb on + strand, within DvMF_2589at 3274.331 kb on + strand, within DvMF_2589at 3274.415 kb on + strand, within DvMF_2589at 3274.433 kb on + strand, within DvMF_2589at 3274.433 kb on + strand, within DvMF_2589at 3274.433 kb on + strand, within DvMF_2589at 3274.441 kb on - strand, within DvMF_2589at 3274.523 kb on - strandat 3274.603 kb on - strandat 3274.653 kb on - strandat 3274.754 kb on - strandat 3274.885 kb on + strandat 3275.145 kb on + strandat 3275.145 kb on + strandat 3275.145 kb on + strandat 3275.317 kb on - strand, within DvMF_2590at 3275.591 kb on - strandat 3275.595 kb on - strandat 3275.687 kb on + strandat 3275.695 kb on - strandat 3275.736 kb on + strand, within DvMF_2591at 3275.812 kb on + strand, within DvMF_2591at 3275.869 kb on + strand, within DvMF_2591at 3276.448 kb on + strand, within DvMF_2592

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Chloramphenicol 0.003125 mg/ml
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3,274,189 - DvMF_2589 0.53 -0.4
3,274,282 + DvMF_2589 0.66 -0.4
3,274,331 + DvMF_2589 0.72 -0.4
3,274,415 + DvMF_2589 0.84 -0.3
3,274,433 + DvMF_2589 0.86 -0.5
3,274,433 + DvMF_2589 0.86 +0.2
3,274,433 + DvMF_2589 0.86 -0.6
3,274,441 - DvMF_2589 0.87 -0.1
3,274,523 - -0.2
3,274,603 - -0.3
3,274,653 - -0.1
3,274,754 - -0.4
3,274,885 + -0.2
3,275,145 + -0.4
3,275,145 + -0.4
3,275,145 + -0.5
3,275,317 - DvMF_2590 0.48 -0.8
3,275,591 - -0.1
3,275,595 - -0.3
3,275,687 + -0.8
3,275,695 - -0.5
3,275,736 + DvMF_2591 0.10 -0.1
3,275,812 + DvMF_2591 0.27 -0.4
3,275,869 + DvMF_2591 0.40 +0.4
3,276,448 + DvMF_2592 0.51 -0.3

Or see this region's nucleotide sequence