Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2496

Experiment: MoYLS4 with Chloramphenicol 0.003125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2494 and DvMF_2495 are separated by 223 nucleotidesDvMF_2495 and DvMF_2496 are separated by 116 nucleotidesDvMF_2496 and DvMF_2497 are separated by 6 nucleotidesDvMF_2497 and DvMF_2498 are separated by 547 nucleotides DvMF_2494: DvMF_2494 - nucleotide sugar dehydrogenase (RefSeq), at 3,146,629 to 3,147,945 _2494 DvMF_2495: DvMF_2495 - hypothetical protein (RefSeq), at 3,148,169 to 3,148,375 _2495 DvMF_2496: DvMF_2496 - ubiquinone/menaquinone biosynthesis methyltransferase (RefSeq), at 3,148,492 to 3,149,670 _2496 DvMF_2497: DvMF_2497 - hypothetical protein (RefSeq), at 3,149,677 to 3,149,883 _2497 DvMF_2498: DvMF_2498 - hypothetical protein (RefSeq), at 3,150,431 to 3,151,990 _2498 Position (kb) 3148 3149 3150Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3147.622 kb on + strand, within DvMF_2494at 3147.651 kb on - strand, within DvMF_2494at 3147.656 kb on - strand, within DvMF_2494at 3148.187 kb on + strandat 3148.187 kb on + strandat 3148.562 kb on + strandat 3148.589 kb on - strandat 3149.891 kb on + strandat 3150.287 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Chloramphenicol 0.003125 mg/ml
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3,147,622 + DvMF_2494 0.75 -3.3
3,147,651 - DvMF_2494 0.78 -4.1
3,147,656 - DvMF_2494 0.78 -4.2
3,148,187 + -0.8
3,148,187 + -0.5
3,148,562 + -0.5
3,148,589 - -0.2
3,149,891 + +0.1
3,150,287 + -0.4

Or see this region's nucleotide sequence