Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2253

Experiment: MoYLS4 with Chloramphenicol 0.003125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2252 and DvMF_2253 are separated by 318 nucleotidesDvMF_2253 and DvMF_2254 overlap by 10 nucleotides DvMF_2252: DvMF_2252 - DEAD/DEAH box helicase domain protein (RefSeq), at 2,828,773 to 2,831,745 _2252 DvMF_2253: DvMF_2253 - Precorrin-8X methylmutase CbiC/CobH (RefSeq), at 2,832,064 to 2,832,801 _2253 DvMF_2254: DvMF_2254 - cobyrinic acid a,c-diamide synthase (RefSeq), at 2,832,792 to 2,834,408 _2254 Position (kb) 2832 2833Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2831.128 kb on - strand, within DvMF_2252at 2831.161 kb on + strand, within DvMF_2252at 2831.338 kb on - strand, within DvMF_2252at 2832.042 kb on - strandat 2832.062 kb on + strandat 2832.341 kb on + strand, within DvMF_2253at 2832.612 kb on - strand, within DvMF_2253at 2832.612 kb on - strand, within DvMF_2253at 2833.069 kb on - strand, within DvMF_2254at 2833.251 kb on + strand, within DvMF_2254at 2833.685 kb on + strand, within DvMF_2254at 2833.790 kb on + strand, within DvMF_2254

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Chloramphenicol 0.003125 mg/ml
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2,831,128 - DvMF_2252 0.79 +0.3
2,831,161 + DvMF_2252 0.80 -0.0
2,831,338 - DvMF_2252 0.86 -0.0
2,832,042 - -0.1
2,832,062 + -0.6
2,832,341 + DvMF_2253 0.38 -3.6
2,832,612 - DvMF_2253 0.74 -3.3
2,832,612 - DvMF_2253 0.74 -3.2
2,833,069 - DvMF_2254 0.17 -3.9
2,833,251 + DvMF_2254 0.28 -3.4
2,833,685 + DvMF_2254 0.55 -4.6
2,833,790 + DvMF_2254 0.62 -2.2

Or see this region's nucleotide sequence