Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1716

Experiment: MoYLS4 with Chloramphenicol 0.003125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1715 and DvMF_1716 are separated by 17 nucleotidesDvMF_1716 and argC are separated by 76 nucleotides DvMF_1715: DvMF_1715 - aminotransferase class V (RefSeq), at 2,096,207 to 2,097,376 _1715 DvMF_1716: DvMF_1716 - Domain of unknown function DUF1844 (RefSeq), at 2,097,394 to 2,097,717 _1716 DvMF_1717: argC - N-acetyl-gamma-glutamyl-phosphate reductase (RefSeq), at 2,097,794 to 2,098,846 argC Position (kb) 2097 2098Strain fitness (log2 ratio) -1 0 1at 2097.931 kb on + strand, within argCat 2098.132 kb on + strand, within argCat 2098.143 kb on + strand, within argCat 2098.440 kb on + strand, within argCat 2098.460 kb on + strand, within argCat 2098.487 kb on - strand, within argCat 2098.507 kb on + strand, within argCat 2098.679 kb on - strand, within argC

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Chloramphenicol 0.003125 mg/ml
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2,097,931 + argC DvMF_1717 0.13 -0.4
2,098,132 + argC DvMF_1717 0.32 -0.2
2,098,143 + argC DvMF_1717 0.33 +0.6
2,098,440 + argC DvMF_1717 0.61 +0.0
2,098,460 + argC DvMF_1717 0.63 -0.2
2,098,487 - argC DvMF_1717 0.66 +0.3
2,098,507 + argC DvMF_1717 0.68 -0.7
2,098,679 - argC DvMF_1717 0.84 -0.2

Or see this region's nucleotide sequence