Experiment: MoYLS4 with Chloramphenicol 0.003125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1687 and DvMF_R0048 are separated by 10 nucleotides DvMF_R0048 and DvMF_1688 are separated by 328 nucleotides DvMF_1688 and DvMF_1689 are separated by 315 nucleotides DvMF_1689 and DvMF_1690 are separated by 27 nucleotides
DvMF_1687: DvMF_1687 - integrase family protein (RefSeq), at 2,054,443 to 2,055,510
_1687
DvMF_R0048: DvMF_R0048 - tRNA-Val (RefSeq), at 2,055,521 to 2,055,596
_R0048
DvMF_1688: DvMF_1688 - hypothetical protein (RefSeq), at 2,055,925 to 2,057,079
_1688
DvMF_1689: DvMF_1689 - hypothetical protein (RefSeq), at 2,057,395 to 2,057,658
_1689
DvMF_1690: DvMF_1690 - polysaccharide export protein (RefSeq), at 2,057,686 to 2,059,362
_1690
Position (kb)
2055
2056
2057
2058 Strain fitness (log2 ratio)
-2
-1
0
1 at 2054.961 kb on - strand, within DvMF_1687 at 2055.001 kb on + strand, within DvMF_1687 at 2055.006 kb on + strand, within DvMF_1687 at 2055.128 kb on - strand, within DvMF_1687 at 2055.137 kb on + strand, within DvMF_1687 at 2055.272 kb on - strand, within DvMF_1687 at 2055.376 kb on + strand, within DvMF_1687 at 2055.376 kb on + strand, within DvMF_1687 at 2055.413 kb on + strand at 2055.523 kb on - strand at 2055.706 kb on + strand at 2055.714 kb on - strand at 2055.773 kb on + strand at 2055.906 kb on - strand at 2056.477 kb on - strand, within DvMF_1688 at 2056.500 kb on - strand, within DvMF_1688 at 2056.803 kb on + strand, within DvMF_1688 at 2056.831 kb on - strand, within DvMF_1688 at 2057.014 kb on - strand at 2057.024 kb on - strand at 2057.104 kb on + strand at 2057.338 kb on + strand at 2057.354 kb on + strand at 2057.374 kb on + strand at 2057.402 kb on + strand at 2057.951 kb on + strand, within DvMF_1690
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Chloramphenicol 0.003125 mg/ml remove 2,054,961 - DvMF_1687 0.49 -0.8 2,055,001 + DvMF_1687 0.52 -0.5 2,055,006 + DvMF_1687 0.53 -0.0 2,055,128 - DvMF_1687 0.64 -1.8 2,055,137 + DvMF_1687 0.65 -0.2 2,055,272 - DvMF_1687 0.78 +0.1 2,055,376 + DvMF_1687 0.87 -0.3 2,055,376 + DvMF_1687 0.87 -0.4 2,055,413 + -0.7 2,055,523 - -0.1 2,055,706 + -0.7 2,055,714 - -0.2 2,055,773 + -0.4 2,055,906 - +0.3 2,056,477 - DvMF_1688 0.48 -0.7 2,056,500 - DvMF_1688 0.50 +0.6 2,056,803 + DvMF_1688 0.76 +0.7 2,056,831 - DvMF_1688 0.78 +0.1 2,057,014 - +0.1 2,057,024 - +0.1 2,057,104 + +0.5 2,057,338 + -0.3 2,057,354 + -0.4 2,057,374 + -0.3 2,057,402 + -0.4 2,057,951 + DvMF_1690 0.16 +0.2
Or see this region's nucleotide sequence