Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1190

Experiment: MoYLS4 with Chloramphenicol 0.003125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1189 and DvMF_1190 are separated by 302 nucleotidesDvMF_1190 and DvMF_1191 are separated by 54 nucleotides DvMF_1189: DvMF_1189 - Radical SAM domain protein (RefSeq), at 1,467,361 to 1,468,521 _1189 DvMF_1190: DvMF_1190 - protein of unknown function DUF178 (RefSeq), at 1,468,824 to 1,469,678 _1190 DvMF_1191: DvMF_1191 - hypothetical protein (RefSeq), at 1,469,733 to 1,470,872 _1191 Position (kb) 1468 1469 1470Strain fitness (log2 ratio) -2 -1 0 1at 1468.485 kb on + strandat 1468.573 kb on - strandat 1468.596 kb on - strandat 1468.750 kb on - strandat 1469.775 kb on - strandat 1469.775 kb on - strandat 1469.859 kb on + strand, within DvMF_1191at 1469.859 kb on + strand, within DvMF_1191at 1469.867 kb on - strand, within DvMF_1191at 1469.881 kb on + strand, within DvMF_1191at 1469.914 kb on + strand, within DvMF_1191at 1469.930 kb on - strand, within DvMF_1191at 1469.931 kb on - strand, within DvMF_1191at 1469.931 kb on - strand, within DvMF_1191at 1469.954 kb on - strand, within DvMF_1191at 1470.521 kb on + strand, within DvMF_1191at 1470.572 kb on - strand, within DvMF_1191at 1470.613 kb on - strand, within DvMF_1191

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Chloramphenicol 0.003125 mg/ml
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1,468,485 + -1.2
1,468,573 - +1.4
1,468,596 - -0.2
1,468,750 - +0.2
1,469,775 - -0.1
1,469,775 - -2.0
1,469,859 + DvMF_1191 0.11 -0.3
1,469,859 + DvMF_1191 0.11 -0.4
1,469,867 - DvMF_1191 0.12 -0.2
1,469,881 + DvMF_1191 0.13 -0.6
1,469,914 + DvMF_1191 0.16 -2.6
1,469,930 - DvMF_1191 0.17 -0.1
1,469,931 - DvMF_1191 0.17 -0.6
1,469,931 - DvMF_1191 0.17 -0.7
1,469,954 - DvMF_1191 0.19 +0.2
1,470,521 + DvMF_1191 0.69 -0.6
1,470,572 - DvMF_1191 0.74 -0.5
1,470,613 - DvMF_1191 0.77 -0.6

Or see this region's nucleotide sequence