Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1180

Experiment: MoYLS4 with Chloramphenicol 0.003125 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_1179 and DvMF_1180 are separated by 224 nucleotidesDvMF_1180 and DvMF_1181 are separated by 345 nucleotides DvMF_1179: DvMF_1179 - extracellular solute-binding protein family 3 (RefSeq), at 1,457,287 to 1,458,444 _1179 DvMF_1180: DvMF_1180 - hypothetical protein (RefSeq), at 1,458,669 to 1,459,139 _1180 DvMF_1181: DvMF_1181 - UDP-N-acetylglucosamine pyrophosphorylase (RefSeq), at 1,459,485 to 1,460,852 _1181 Position (kb) 1458 1459 1460Strain fitness (log2 ratio) -1 0 1at 1457.743 kb on - strand, within DvMF_1179at 1457.762 kb on - strand, within DvMF_1179at 1457.799 kb on - strand, within DvMF_1179at 1457.889 kb on + strand, within DvMF_1179at 1458.104 kb on + strand, within DvMF_1179at 1458.265 kb on + strand, within DvMF_1179at 1458.497 kb on - strandat 1458.532 kb on + strandat 1458.533 kb on - strandat 1458.630 kb on + strandat 1458.864 kb on - strand, within DvMF_1180at 1459.142 kb on + strandat 1459.355 kb on - strandat 1459.355 kb on - strandat 1459.355 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Chloramphenicol 0.003125 mg/ml
remove
1,457,743 - DvMF_1179 0.39 +0.0
1,457,762 - DvMF_1179 0.41 -0.4
1,457,799 - DvMF_1179 0.44 -0.4
1,457,889 + DvMF_1179 0.52 -0.3
1,458,104 + DvMF_1179 0.71 -0.8
1,458,265 + DvMF_1179 0.84 -0.3
1,458,497 - -1.0
1,458,532 + -0.4
1,458,533 - -0.2
1,458,630 + -0.6
1,458,864 - DvMF_1180 0.41 -0.1
1,459,142 + -0.5
1,459,355 - +0.1
1,459,355 - -0.3
1,459,355 - -0.5

Or see this region's nucleotide sequence