Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1091

Experiment: MoYLS4 with Chloramphenicol 0.003125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1090 and DvMF_1091 are separated by 817 nucleotidesDvMF_1091 and DvMF_1092 are separated by 168 nucleotidesDvMF_1092 and DvMF_1093 overlap by 10 nucleotides DvMF_1090: DvMF_1090 - hypothetical protein (RefSeq), at 1,332,380 to 1,333,438 _1090 DvMF_1091: DvMF_1091 - single-strand binding protein/Primosomal replication protein n (RefSeq), at 1,334,256 to 1,334,786 _1091 DvMF_1092: DvMF_1092 - hypothetical protein (RefSeq), at 1,334,955 to 1,335,386 _1092 DvMF_1093: DvMF_1093 - hypothetical protein (RefSeq), at 1,335,377 to 1,335,685 _1093 Position (kb) 1334 1335Strain fitness (log2 ratio) -1 0 1at 1333.283 kb on - strand, within DvMF_1090at 1333.687 kb on - strandat 1333.738 kb on - strandat 1333.782 kb on + strandat 1333.839 kb on - strandat 1333.895 kb on + strandat 1333.926 kb on - strandat 1334.261 kb on - strandat 1334.367 kb on - strand, within DvMF_1091at 1334.437 kb on + strand, within DvMF_1091at 1334.585 kb on + strand, within DvMF_1091at 1334.762 kb on + strandat 1334.812 kb on + strandat 1334.985 kb on + strandat 1335.220 kb on + strand, within DvMF_1092at 1335.256 kb on + strand, within DvMF_1092at 1335.274 kb on + strand, within DvMF_1092at 1335.564 kb on - strand, within DvMF_1093at 1335.565 kb on + strand, within DvMF_1093

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Chloramphenicol 0.003125 mg/ml
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1,333,283 - DvMF_1090 0.85 -0.3
1,333,687 - -0.4
1,333,738 - +1.1
1,333,782 + -0.3
1,333,839 - -0.5
1,333,895 + -0.4
1,333,926 - -0.9
1,334,261 - -0.3
1,334,367 - DvMF_1091 0.21 +0.5
1,334,437 + DvMF_1091 0.34 -0.5
1,334,585 + DvMF_1091 0.62 -0.4
1,334,762 + -0.6
1,334,812 + -0.5
1,334,985 + +0.1
1,335,220 + DvMF_1092 0.61 -0.3
1,335,256 + DvMF_1092 0.70 -1.2
1,335,274 + DvMF_1092 0.74 -0.1
1,335,564 - DvMF_1093 0.61 -0.3
1,335,565 + DvMF_1093 0.61 -0.5

Or see this region's nucleotide sequence