Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0966

Experiment: MoYLS4 with Chloramphenicol 0.003125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0965 and DvMF_0966 are separated by 121 nucleotidesDvMF_0966 and DvMF_0967 are separated by 283 nucleotides DvMF_0965: DvMF_0965 - pyruvate kinase (RefSeq), at 1,170,875 to 1,172,287 _0965 DvMF_0966: DvMF_0966 - metal dependent phosphohydrolase (RefSeq), at 1,172,409 to 1,173,440 _0966 DvMF_0967: DvMF_0967 - putative transcriptional regulator, XRE family (RefSeq), at 1,173,724 to 1,174,221 _0967 Position (kb) 1172 1173 1174Strain fitness (log2 ratio) -2 -1 0 1at 1171.548 kb on - strand, within DvMF_0965at 1171.712 kb on + strand, within DvMF_0965at 1172.140 kb on - strand, within DvMF_0965at 1172.397 kb on - strandat 1172.597 kb on - strand, within DvMF_0966at 1172.608 kb on - strand, within DvMF_0966at 1172.647 kb on + strand, within DvMF_0966at 1172.734 kb on + strand, within DvMF_0966at 1172.742 kb on - strand, within DvMF_0966at 1172.982 kb on + strand, within DvMF_0966at 1172.990 kb on - strand, within DvMF_0966at 1172.990 kb on - strand, within DvMF_0966at 1173.036 kb on - strand, within DvMF_0966at 1173.036 kb on - strand, within DvMF_0966at 1173.053 kb on + strand, within DvMF_0966at 1173.189 kb on - strand, within DvMF_0966at 1173.200 kb on + strand, within DvMF_0966at 1173.358 kb on - strandat 1173.591 kb on + strandat 1173.637 kb on + strandat 1173.640 kb on - strandat 1173.792 kb on - strand, within DvMF_0967at 1174.067 kb on + strand, within DvMF_0967

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Chloramphenicol 0.003125 mg/ml
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1,171,548 - DvMF_0965 0.48 -1.0
1,171,712 + DvMF_0965 0.59 -2.7
1,172,140 - DvMF_0965 0.90 -2.4
1,172,397 - -0.3
1,172,597 - DvMF_0966 0.18 +1.2
1,172,608 - DvMF_0966 0.19 +0.0
1,172,647 + DvMF_0966 0.23 +0.0
1,172,734 + DvMF_0966 0.31 +0.3
1,172,742 - DvMF_0966 0.32 +0.8
1,172,982 + DvMF_0966 0.56 +0.3
1,172,990 - DvMF_0966 0.56 +0.3
1,172,990 - DvMF_0966 0.56 +0.3
1,173,036 - DvMF_0966 0.61 -0.0
1,173,036 - DvMF_0966 0.61 -0.5
1,173,053 + DvMF_0966 0.62 +1.1
1,173,189 - DvMF_0966 0.76 +0.6
1,173,200 + DvMF_0966 0.77 +0.4
1,173,358 - +0.6
1,173,591 + -0.4
1,173,637 + +0.5
1,173,640 - -0.7
1,173,792 - DvMF_0967 0.14 -0.5
1,174,067 + DvMF_0967 0.69 -0.6

Or see this region's nucleotide sequence