Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0856

Experiment: MoYLS4 with Chloramphenicol 0.003125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0854 and DvMF_0855 are separated by 2 nucleotidesDvMF_0855 and DvMF_0856 are separated by 40 nucleotidesDvMF_0856 and DvMF_0857 are separated by 320 nucleotides DvMF_0854: DvMF_0854 - Mammalian cell entry related domain protein (RefSeq), at 1,032,199 to 1,032,645 _0854 DvMF_0855: DvMF_0855 - toluene tolerance family protein (RefSeq), at 1,032,648 to 1,033,352 _0855 DvMF_0856: DvMF_0856 - VacJ family lipoprotein (RefSeq), at 1,033,393 to 1,034,172 _0856 DvMF_0857: DvMF_0857 - Cupin 2 conserved barrel domain protein (RefSeq), at 1,034,493 to 1,034,810 _0857 Position (kb) 1033 1034 1035Strain fitness (log2 ratio) -2 -1 0 1at 1032.405 kb on + strand, within DvMF_0854at 1032.461 kb on - strand, within DvMF_0854at 1032.630 kb on + strandat 1032.707 kb on + strandat 1032.797 kb on - strand, within DvMF_0855at 1032.852 kb on + strand, within DvMF_0855at 1033.015 kb on + strand, within DvMF_0855at 1033.286 kb on + strandat 1033.656 kb on - strand, within DvMF_0856at 1033.683 kb on + strand, within DvMF_0856at 1033.757 kb on + strand, within DvMF_0856at 1034.523 kb on - strandat 1034.677 kb on - strand, within DvMF_0857at 1034.779 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Chloramphenicol 0.003125 mg/ml
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1,032,405 + DvMF_0854 0.46 -1.3
1,032,461 - DvMF_0854 0.59 -2.4
1,032,630 + -1.8
1,032,707 + -1.5
1,032,797 - DvMF_0855 0.21 -1.5
1,032,852 + DvMF_0855 0.29 -0.6
1,033,015 + DvMF_0855 0.52 -1.9
1,033,286 + -0.2
1,033,656 - DvMF_0856 0.34 -1.4
1,033,683 + DvMF_0856 0.37 -1.7
1,033,757 + DvMF_0856 0.47 -1.4
1,034,523 - -0.5
1,034,677 - DvMF_0857 0.58 -0.2
1,034,779 - -0.9

Or see this region's nucleotide sequence