Experiment: MoYLS4 with Chloramphenicol 0.003125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0819 and DvMF_0820 overlap by 11 nucleotides DvMF_0820 and DvMF_0821 are separated by 138 nucleotides DvMF_0821 and DvMF_0822 are separated by 922 nucleotides
DvMF_0819: DvMF_0819 - OmpA/MotB domain protein (RefSeq), at 987,821 to 988,555
_0819
DvMF_0820: DvMF_0820 - MotA/TolQ/ExbB proton channel (RefSeq), at 988,545 to 989,300
_0820
DvMF_0821: DvMF_0821 - purine nucleoside phosphorylase (RefSeq), at 989,439 to 990,284
_0821
DvMF_0822: DvMF_0822 - GTP-binding protein TypA (RefSeq), at 991,207 to 993,045
_0822
Position (kb) 989
990
991 Strain fitness (log2 ratio) -1
0
1 at 988.720 kb on + strand, within DvMF_0820 at 989.240 kb on + strand at 989.243 kb on - strand at 989.546 kb on - strand, within DvMF_0821 at 989.680 kb on + strand, within DvMF_0821 at 989.891 kb on - strand, within DvMF_0821 at 990.154 kb on + strand, within DvMF_0821 at 990.187 kb on + strand, within DvMF_0821 at 990.279 kb on + strand at 990.279 kb on + strand at 990.291 kb on + strand at 990.299 kb on - strand at 990.321 kb on - strand at 990.582 kb on + strand at 990.592 kb on + strand at 990.609 kb on + strand at 990.826 kb on + strand at 990.874 kb on - strand at 991.159 kb on + strand at 991.232 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Chloramphenicol 0.003125 mg/ml remove 988,720 + DvMF_0820 0.23 -1.1 989,240 + -0.6 989,243 - -0.3 989,546 - DvMF_0821 0.13 -0.7 989,680 + DvMF_0821 0.28 -0.6 989,891 - DvMF_0821 0.53 -0.2 990,154 + DvMF_0821 0.85 -0.3 990,187 + DvMF_0821 0.88 -0.4 990,279 + -0.0 990,279 + -0.1 990,291 + -0.2 990,299 - -0.4 990,321 - -0.4 990,582 + -0.3 990,592 + -0.4 990,609 + +0.2 990,826 + +0.2 990,874 - +0.1 991,159 + -0.8 991,232 + -1.0
Or see this region's nucleotide sequence