Experiment: MoYLS4 with Chloramphenicol 0.003125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0355 and DvMF_0356 are separated by 461 nucleotides DvMF_0356 and DvMF_0357 are separated by 12 nucleotides
DvMF_0355: DvMF_0355 - DNA mismatch repair protein MutS (RefSeq), at 412,711 to 415,443
_0355
DvMF_0356: DvMF_0356 - Tetratricopeptide TPR_4 (RefSeq), at 415,905 to 417,113
_0356
DvMF_0357: DvMF_0357 - histidine triad (HIT) protein (RefSeq), at 417,126 to 418,022
_0357
Position (kb) 415
416
417
418 Strain fitness (log2 ratio) -1
0
1 at 414.908 kb on + strand, within DvMF_0355 at 414.932 kb on + strand, within DvMF_0355 at 415.064 kb on + strand, within DvMF_0355 at 415.064 kb on + strand, within DvMF_0355 at 415.072 kb on - strand, within DvMF_0355 at 415.107 kb on + strand, within DvMF_0355 at 415.125 kb on - strand, within DvMF_0355 at 415.212 kb on + strand at 415.298 kb on - strand at 415.312 kb on + strand at 415.441 kb on + strand at 415.746 kb on - strand at 415.819 kb on + strand at 415.827 kb on - strand at 415.827 kb on - strand at 415.893 kb on + strand at 415.901 kb on - strand at 415.972 kb on - strand at 415.974 kb on - strand at 416.237 kb on + strand, within DvMF_0356 at 416.415 kb on - strand, within DvMF_0356 at 416.508 kb on - strand, within DvMF_0356 at 416.508 kb on - strand, within DvMF_0356 at 416.554 kb on + strand, within DvMF_0356 at 416.562 kb on - strand, within DvMF_0356 at 416.598 kb on + strand, within DvMF_0356 at 416.722 kb on - strand, within DvMF_0356 at 416.880 kb on + strand, within DvMF_0356 at 416.989 kb on - strand, within DvMF_0356 at 417.089 kb on + strand at 417.097 kb on - strand at 417.099 kb on + strand at 417.603 kb on - strand, within DvMF_0357 at 417.603 kb on - strand, within DvMF_0357 at 417.760 kb on + strand, within DvMF_0357 at 417.766 kb on + strand, within DvMF_0357 at 417.844 kb on + strand, within DvMF_0357 at 417.869 kb on - strand, within DvMF_0357 at 417.914 kb on - strand, within DvMF_0357 at 417.914 kb on - strand, within DvMF_0357
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Chloramphenicol 0.003125 mg/ml remove 414,908 + DvMF_0355 0.80 -0.4 414,932 + DvMF_0355 0.81 -0.5 415,064 + DvMF_0355 0.86 -0.3 415,064 + DvMF_0355 0.86 -1.3 415,072 - DvMF_0355 0.86 -0.1 415,107 + DvMF_0355 0.88 -0.3 415,125 - DvMF_0355 0.88 -0.3 415,212 + -0.4 415,298 - -0.6 415,312 + -0.6 415,441 + -0.7 415,746 - -0.6 415,819 + +0.2 415,827 - -0.2 415,827 - -0.4 415,893 + +0.4 415,901 - +0.2 415,972 - -0.0 415,974 - -0.2 416,237 + DvMF_0356 0.27 -0.0 416,415 - DvMF_0356 0.42 -0.2 416,508 - DvMF_0356 0.50 -0.3 416,508 - DvMF_0356 0.50 -0.5 416,554 + DvMF_0356 0.54 +0.0 416,562 - DvMF_0356 0.54 -0.7 416,598 + DvMF_0356 0.57 -0.5 416,722 - DvMF_0356 0.68 +0.1 416,880 + DvMF_0356 0.81 -0.9 416,989 - DvMF_0356 0.90 -0.1 417,089 + -0.5 417,097 - -0.1 417,099 + -0.2 417,603 - DvMF_0357 0.53 -1.5 417,603 - DvMF_0357 0.53 -0.8 417,760 + DvMF_0357 0.71 -1.7 417,766 + DvMF_0357 0.71 -0.9 417,844 + DvMF_0357 0.80 -0.8 417,869 - DvMF_0357 0.83 -1.6 417,914 - DvMF_0357 0.88 -1.3 417,914 - DvMF_0357 0.88 -1.2
Or see this region's nucleotide sequence