Strain Fitness in Shewanella amazonensis SB2B around Sama_1092

Experiment: D-Glucose

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucose
1,317,554	+		Sama_1090	0.82	+0.9
1,317,554	+		Sama_1090	0.82	-1.1
1,317,588	+		Sama_1090	0.87	-0.7
1,317,588	+		Sama_1090	0.87	+0.6
1,317,588	+		Sama_1090	0.87	-0.2
1,317,589	-		Sama_1090	0.87	+0.2
1,317,589	-		Sama_1090	0.87	-1.7
1,317,589	-		Sama_1090	0.87	-0.6
1,317,589	-		Sama_1090	0.87	-1.7
1,317,589	-		Sama_1090	0.87	+0.8
1,317,589	-		Sama_1090	0.87	-0.3
1,317,589	-		Sama_1090	0.87	-1.2
1,317,589	-		Sama_1090	0.87	-2.4
1,317,589	-		Sama_1090	0.87	-0.3
1,317,625	+				-0.6
1,317,678	+				-1.3
1,317,678	+				-2.2
1,317,678	+				+0.3
1,317,678	+				-0.0
1,317,678	+				-0.2
1,317,679	-				-0.4
1,317,756	+				-1.0
1,317,989	-		Sama_1091	0.38	+0.6
1,317,994	+		Sama_1091	0.39	-0.7
1,317,994	+		Sama_1091	0.39	+0.6
1,317,994	+		Sama_1091	0.39	-0.8
1,317,995	-		Sama_1091	0.39	-0.6
1,318,007	+		Sama_1091	0.41	-1.4
1,318,007	+		Sama_1091	0.41	+1.7
1,318,008	-		Sama_1091	0.41	-0.6
1,318,055	+		Sama_1091	0.50	+1.2
1,318,055	+		Sama_1091	0.50	+1.2
1,318,055	+		Sama_1091	0.50	-0.4
1,318,056	-		Sama_1091	0.50	-0.6
1,318,062	+		Sama_1091	0.51	+0.6
1,318,062	+		Sama_1091	0.51	-0.2
1,318,062	+		Sama_1091	0.51	+0.2
1,318,063	-		Sama_1091	0.51	+1.7
1,318,063	-		Sama_1091	0.51	-2.6
1,318,063	-		Sama_1091	0.51	-1.3
1,318,063	-		Sama_1091	0.51	+0.6
1,318,063	-		Sama_1091	0.51	-0.2
1,318,247	+		Sama_1091	0.83	+0.3
1,318,248	-		Sama_1091	0.84	-0.9
1,318,248	-		Sama_1091	0.84	-1.8
1,318,248	-		Sama_1091	0.84	+0.2
1,318,291	+				-0.4
1,318,311	-				-0.3
1,318,323	+				+1.3
1,318,323	+				-1.3
1,318,323	+				-1.2
1,318,323	+				-0.4
1,318,323	+				-1.4
1,318,323	+				+0.7
1,318,323	+				-0.2
1,318,323	+				+0.0
1,318,323	+				+0.6
1,318,324	-				+0.8
1,318,324	-				+0.6
1,318,328	+				-0.0
1,318,328	+				+0.5
1,318,329	-				-0.6
1,318,394	-				+0.2
1,318,400	+				-1.0
1,318,416	-				-1.2
1,318,431	+				+1.5
1,318,431	+				+0.4
1,318,431	+				-1.5
1,318,431	+				-0.7
1,318,431	+				-0.4
1,318,431	+				-0.0
1,318,432	-				+0.2
1,318,432	-				-1.4
1,318,435	+				-0.2
1,318,435	+				+1.2
1,318,435	+				-1.2
1,318,435	+				+1.2
1,318,435	+				+0.2
1,318,435	+				-0.0
1,318,435	+				+2.4
1,318,436	-				-1.2
1,318,436	-				+0.2
1,318,436	-				+1.2
1,318,458	-				+0.8
1,318,513	+				-0.1
1,318,522	+				-0.2
1,318,542	+				-0.6
1,318,543	-				+0.6
1,318,543	-				-1.6
1,318,636	+				+0.0
1,318,636	+				-0.8
1,318,636	+				+1.6
1,318,636	+				-1.0
1,318,645	-		Sama_1092	0.10	-0.4
1,318,670	+		Sama_1092	0.12	+0.7
1,318,670	+		Sama_1092	0.12	+0.3
1,318,670	+		Sama_1092	0.12	-0.4
1,318,671	-		Sama_1092	0.13	-0.8
1,318,671	-		Sama_1092	0.13	+0.0
1,318,671	-		Sama_1092	0.13	+0.9
1,318,770	+		Sama_1092	0.22	+1.0
1,318,771	-		Sama_1092	0.22	+0.3
1,318,771	-		Sama_1092	0.22	+1.2
1,318,789	-		Sama_1092	0.24	-0.4
1,318,795	-		Sama_1092	0.25	-0.5
1,318,963	-		Sama_1092	0.41	-0.0
1,319,019	+		Sama_1092	0.47	-2.3
1,319,019	+		Sama_1092	0.47	+2.2
1,319,020	-		Sama_1092	0.47	-0.8
1,319,022	+		Sama_1092	0.47	+1.4
1,319,023	-		Sama_1092	0.47	-0.4
1,319,076	+		Sama_1092	0.52	-0.7
1,319,077	-		Sama_1092	0.53	-0.5
1,319,077	-		Sama_1092	0.53	+2.2
1,319,077	-		Sama_1092	0.53	-1.0
1,319,097	+		Sama_1092	0.54	-1.5
1,319,098	-		Sama_1092	0.55	+1.0
1,319,139	+		Sama_1092	0.59	-1.0
1,319,139	+		Sama_1092	0.59	+0.8
1,319,139	+		Sama_1092	0.59	-1.1
1,319,140	-		Sama_1092	0.59	+0.2
1,319,140	-		Sama_1092	0.59	-1.7
1,319,146	+		Sama_1092	0.59	-0.0
1,319,147	-		Sama_1092	0.59	-1.5
1,319,249	+		Sama_1092	0.69	-1.0
1,319,288	-		Sama_1092	0.73	-0.2
1,319,294	+		Sama_1092	0.74	+0.0
1,319,362	-		Sama_1092	0.81	-2.5
1,319,371	+		Sama_1092	0.81	-0.5
1,319,429	+		Sama_1092	0.87	-1.3
1,319,429	+		Sama_1092	0.87	-0.4
1,319,429	+		Sama_1092	0.87	-0.0
1,319,429	+		Sama_1092	0.87	-0.8
1,319,430	-		Sama_1092	0.87	-0.1
1,319,430	-		Sama_1092	0.87	+0.4
1,319,430	-		Sama_1092	0.87	-0.4
1,319,430	-		Sama_1092	0.87	+0.0
1,319,435	+		Sama_1092	0.88	-0.8
1,319,435	+		Sama_1092	0.88	-0.8
1,319,435	+		Sama_1092	0.88	-0.3
1,319,435	+		Sama_1092	0.88	-1.2
1,319,435	+		Sama_1092	0.88	+0.3
1,319,435	+		Sama_1092	0.88	-1.2
1,319,435	+		Sama_1092	0.88	-0.7
1,319,435	+		Sama_1092	0.88	+0.9
1,319,435	+		Sama_1092	0.88	+0.8
1,319,435	+		Sama_1092	0.88	+0.2
1,319,435	+		Sama_1092	0.88	-1.3
1,319,436	-		Sama_1092	0.88	-0.3
1,319,436	-		Sama_1092	0.88	-0.5
1,319,436	-		Sama_1092	0.88	-0.7
1,319,436	-		Sama_1092	0.88	+0.9
1,319,436	-		Sama_1092	0.88	-0.3
1,319,436	-		Sama_1092	0.88	-0.2
1,319,436	-		Sama_1092	0.88	-0.5
1,319,436	-		Sama_1092	0.88	-2.0
1,319,436	-		Sama_1092	0.88	-1.7
1,319,439	+		Sama_1092	0.88	-1.5
1,319,439	+		Sama_1092	0.88	-0.7
1,319,439	+		Sama_1092	0.88	-0.1
1,319,439	+		Sama_1092	0.88	+0.6
1,319,439	+		Sama_1092	0.88	-0.9
1,319,439	+		Sama_1092	0.88	-1.0
1,319,440	-		Sama_1092	0.88	-1.2
1,319,448	+		Sama_1092	0.89	-1.1
1,319,479	+				+0.6
1,319,479	+				-0.4
1,319,484	+				-0.7
1,319,485	-				-0.2
1,319,485	-				-1.0
1,319,485	-				-1.7
1,319,485	-				-1.3
1,319,485	-				-0.3
1,319,551	+				-0.8
1,319,551	+				+1.2
1,319,552	-				-0.2
1,319,557	+				+0.6
1,319,558	-				+0.1
1,319,558	-				+0.3
1,319,624	+				-0.7
1,319,631	+		Sama_1093	0.10	-1.7
1,319,635	+		Sama_1093	0.11	-0.8
1,319,635	+		Sama_1093	0.11	-1.0
1,319,635	+		Sama_1093	0.11	-1.4
1,319,635	+		Sama_1093	0.11	+2.2
1,319,636	-		Sama_1093	0.11	+1.6
1,319,636	-		Sama_1093	0.11	-2.2
1,319,694	+		Sama_1093	0.21	+3.5
1,319,752	+		Sama_1093	0.30	-0.5
1,319,752	+		Sama_1093	0.30	-0.3
1,319,753	-		Sama_1093	0.30	+1.0
1,319,753	-		Sama_1093	0.30	-0.4
1,319,762	-		Sama_1093	0.32	-1.0
1,319,773	-		Sama_1093	0.33	-0.3
1,319,820	-		Sama_1093	0.41	-0.2
1,319,973	-		Sama_1093	0.66	+0.6
1,320,039	+		Sama_1093	0.77	-0.2
1,320,039	+		Sama_1093	0.77	+2.2
1,320,039	+		Sama_1093	0.77	+0.8
1,320,039	+		Sama_1093	0.77	-0.8
1,320,040	-		Sama_1093	0.77	+0.6
1,320,040	-		Sama_1093	0.77	+1.2
1,320,099	-		Sama_1093	0.87	-0.8
1,320,180	+				-1.3
1,320,180	+				+0.8
1,320,181	-				-0.8
1,320,181	-				+0.8
1,320,181	-				+0.2
1,320,182	+				-1.7
1,320,183	-				+0.2
1,320,183	-				-0.6
1,320,224	+				-1.5
1,320,230	-				-0.8
1,320,230	-				+1.2
1,320,251	+				+1.3
1,320,303	+				+2.2
1,320,303	+				-1.2
1,320,303	+				+0.2
1,320,303	+				+0.5
1,320,303	+				-1.3
1,320,303	+				-0.8
1,320,303	+				-0.5
1,320,304	-				-0.2
1,320,304	-				-0.3
1,320,304	-				+0.0
1,320,343	+		Sama_1094	0.10	-0.2
1,320,344	-		Sama_1094	0.10	-1.3
1,320,362	+		Sama_1094	0.13	-1.1
1,320,394	+		Sama_1094	0.17	-1.3
1,320,394	+		Sama_1094	0.17	-0.1
1,320,394	+		Sama_1094	0.17	-1.4
1,320,395	-		Sama_1094	0.17	-0.2
1,320,395	-		Sama_1094	0.17	-1.7
1,320,430	-		Sama_1094	0.22	+0.6
1,320,552	+		Sama_1094	0.39	-0.3
1,320,552	+		Sama_1094	0.39	-0.3
1,320,552	+		Sama_1094	0.39	+0.6
1,320,553	-		Sama_1094	0.39	-1.3