Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0313 and Sama_0314 are separated by 169 nucleotides Sama_0314 and Sama_0315 are separated by 546 nucleotides
Sama_0313: Sama_0313 - DNA topoisomerase I (RefSeq), at 378,604 to 379,386
_0313
Sama_0314: Sama_0314 - hypothetical protein (RefSeq), at 379,556 to 379,834
_0314
Sama_0315: Sama_0315 - hypothetical protein (RefSeq), at 380,381 to 380,974
_0315
Position (kb) 379
380 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7
8
9
10
11
12
13 at 378.566 kb on + strand at 378.567 kb on - strand at 378.567 kb on - strand at 378.567 kb on - strand at 378.622 kb on - strand at 378.622 kb on - strand at 378.622 kb on - strand at 378.622 kb on - strand at 378.633 kb on + strand at 378.633 kb on + strand at 378.749 kb on - strand, within Sama_0313 at 378.749 kb on - strand, within Sama_0313 at 378.781 kb on - strand, within Sama_0313 at 378.803 kb on - strand, within Sama_0313 at 378.807 kb on + strand, within Sama_0313 at 378.807 kb on + strand, within Sama_0313 at 378.808 kb on - strand, within Sama_0313 at 378.808 kb on - strand, within Sama_0313 at 378.808 kb on - strand, within Sama_0313 at 378.839 kb on + strand, within Sama_0313 at 378.839 kb on + strand, within Sama_0313 at 378.839 kb on + strand, within Sama_0313 at 378.840 kb on - strand, within Sama_0313 at 378.840 kb on - strand, within Sama_0313 at 378.857 kb on - strand, within Sama_0313 at 378.902 kb on + strand, within Sama_0313 at 378.902 kb on + strand, within Sama_0313 at 378.902 kb on + strand, within Sama_0313 at 378.902 kb on + strand, within Sama_0313 at 378.902 kb on + strand, within Sama_0313 at 378.902 kb on + strand, within Sama_0313 at 378.903 kb on - strand, within Sama_0313 at 378.903 kb on - strand, within Sama_0313 at 378.903 kb on - strand, within Sama_0313 at 378.930 kb on + strand, within Sama_0313 at 378.930 kb on + strand, within Sama_0313 at 378.988 kb on + strand, within Sama_0313 at 378.988 kb on + strand, within Sama_0313 at 378.989 kb on - strand, within Sama_0313 at 378.989 kb on - strand, within Sama_0313 at 378.989 kb on - strand, within Sama_0313 at 379.017 kb on + strand, within Sama_0313 at 379.017 kb on + strand, within Sama_0313 at 379.090 kb on + strand, within Sama_0313 at 379.091 kb on - strand, within Sama_0313 at 379.100 kb on + strand, within Sama_0313 at 379.100 kb on + strand, within Sama_0313 at 379.100 kb on + strand, within Sama_0313 at 379.101 kb on - strand, within Sama_0313 at 379.101 kb on - strand, within Sama_0313 at 379.218 kb on + strand, within Sama_0313 at 379.218 kb on + strand, within Sama_0313 at 379.218 kb on + strand, within Sama_0313 at 379.218 kb on + strand, within Sama_0313 at 379.218 kb on + strand, within Sama_0313 at 379.218 kb on + strand, within Sama_0313 at 379.218 kb on + strand, within Sama_0313 at 379.218 kb on + strand, within Sama_0313 at 379.218 kb on + strand, within Sama_0313 at 379.218 kb on + strand, within Sama_0313 at 379.219 kb on - strand, within Sama_0313 at 379.219 kb on - strand, within Sama_0313 at 379.219 kb on - strand, within Sama_0313 at 379.219 kb on - strand, within Sama_0313 at 379.221 kb on - strand, within Sama_0313 at 379.221 kb on - strand, within Sama_0313 at 379.221 kb on - strand, within Sama_0313 at 379.221 kb on - strand, within Sama_0313 at 379.221 kb on - strand, within Sama_0313 at 379.253 kb on - strand, within Sama_0313 at 379.290 kb on + strand, within Sama_0313 at 379.290 kb on + strand, within Sama_0313 at 379.341 kb on - strand at 379.439 kb on + strand at 379.440 kb on - strand at 379.440 kb on - strand at 379.440 kb on - strand at 379.440 kb on - strand at 379.468 kb on - strand at 379.477 kb on - strand at 379.477 kb on - strand at 379.530 kb on + strand at 379.530 kb on + strand at 379.553 kb on + strand at 379.592 kb on + strand, within Sama_0314 at 379.598 kb on - strand, within Sama_0314 at 379.599 kb on + strand, within Sama_0314 at 379.599 kb on + strand, within Sama_0314 at 379.619 kb on - strand, within Sama_0314 at 379.619 kb on - strand, within Sama_0314 at 379.634 kb on + strand, within Sama_0314 at 379.635 kb on - strand, within Sama_0314 at 379.648 kb on + strand, within Sama_0314 at 379.673 kb on + strand, within Sama_0314 at 379.690 kb on - strand, within Sama_0314 at 379.690 kb on - strand, within Sama_0314 at 379.693 kb on + strand, within Sama_0314 at 379.693 kb on + strand, within Sama_0314 at 379.693 kb on + strand, within Sama_0314 at 379.700 kb on - strand, within Sama_0314 at 379.712 kb on + strand, within Sama_0314 at 379.713 kb on - strand, within Sama_0314 at 379.748 kb on - strand, within Sama_0314 at 379.774 kb on + strand, within Sama_0314 at 379.799 kb on - strand, within Sama_0314 at 379.834 kb on + strand at 379.835 kb on - strand at 379.835 kb on - strand at 379.837 kb on - strand at 379.873 kb on + strand at 379.874 kb on - strand at 379.988 kb on - strand at 379.988 kb on - strand at 380.008 kb on + strand at 380.101 kb on + strand at 380.120 kb on - strand at 380.123 kb on - strand at 380.141 kb on + strand at 380.142 kb on - strand at 380.142 kb on - strand at 380.190 kb on + strand at 380.193 kb on + strand at 380.193 kb on + strand at 380.233 kb on + strand at 380.234 kb on - strand at 380.242 kb on + strand at 380.309 kb on + strand at 380.310 kb on - strand at 380.343 kb on - strand at 380.352 kb on + strand at 380.353 kb on - strand at 380.353 kb on - strand at 380.358 kb on + strand at 380.359 kb on - strand at 380.370 kb on + strand at 380.371 kb on - strand at 380.371 kb on - strand at 380.452 kb on + strand, within Sama_0315 at 380.452 kb on + strand, within Sama_0315 at 380.500 kb on + strand, within Sama_0315 at 380.500 kb on + strand, within Sama_0315 at 380.500 kb on + strand, within Sama_0315 at 380.500 kb on + strand, within Sama_0315 at 380.500 kb on + strand, within Sama_0315 at 380.500 kb on + strand, within Sama_0315 at 380.511 kb on + strand, within Sama_0315 at 380.512 kb on - strand, within Sama_0315 at 380.543 kb on + strand, within Sama_0315 at 380.543 kb on + strand, within Sama_0315 at 380.629 kb on - strand, within Sama_0315 at 380.629 kb on - strand, within Sama_0315 at 380.629 kb on - strand, within Sama_0315 at 380.629 kb on - strand, within Sama_0315 at 380.633 kb on - strand, within Sama_0315 at 380.685 kb on + strand, within Sama_0315 at 380.776 kb on + strand, within Sama_0315 at 380.776 kb on + strand, within Sama_0315 at 380.797 kb on + strand, within Sama_0315 at 380.797 kb on + strand, within Sama_0315 at 380.803 kb on + strand, within Sama_0315 at 380.803 kb on + strand, within Sama_0315 at 380.804 kb on - strand, within Sama_0315 at 380.804 kb on - strand, within Sama_0315 at 380.804 kb on - strand, within Sama_0315 at 380.804 kb on - strand, within Sama_0315 at 380.830 kb on + strand, within Sama_0315
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 378,566 + +0.4 378,567 - +0.3 378,567 - +0.7 378,567 - +0.3 378,622 - -2.4 378,622 - +1.1 378,622 - +1.6 378,622 - -0.4 378,633 + +0.0 378,633 + -0.8 378,749 - Sama_0313 0.19 -0.4 378,749 - Sama_0313 0.19 -0.2 378,781 - Sama_0313 0.23 +0.4 378,803 - Sama_0313 0.25 -1.1 378,807 + Sama_0313 0.26 -1.1 378,807 + Sama_0313 0.26 -1.2 378,808 - Sama_0313 0.26 -0.1 378,808 - Sama_0313 0.26 -0.2 378,808 - Sama_0313 0.26 -0.5 378,839 + Sama_0313 0.30 -1.1 378,839 + Sama_0313 0.30 +0.7 378,839 + Sama_0313 0.30 -0.6 378,840 - Sama_0313 0.30 -0.2 378,840 - Sama_0313 0.30 +0.1 378,857 - Sama_0313 0.32 -1.9 378,902 + Sama_0313 0.38 -1.3 378,902 + Sama_0313 0.38 +1.2 378,902 + Sama_0313 0.38 -1.9 378,902 + Sama_0313 0.38 +0.8 378,902 + Sama_0313 0.38 +0.8 378,902 + Sama_0313 0.38 -0.7 378,903 - Sama_0313 0.38 +1.0 378,903 - Sama_0313 0.38 -0.5 378,903 - Sama_0313 0.38 +2.6 378,930 + Sama_0313 0.42 +0.3 378,930 + Sama_0313 0.42 +0.1 378,988 + Sama_0313 0.49 -0.7 378,988 + Sama_0313 0.49 -0.5 378,989 - Sama_0313 0.49 -1.6 378,989 - Sama_0313 0.49 +2.6 378,989 - Sama_0313 0.49 +0.6 379,017 + Sama_0313 0.53 -0.1 379,017 + Sama_0313 0.53 -0.3 379,090 + Sama_0313 0.62 -1.7 379,091 - Sama_0313 0.62 +1.6 379,100 + Sama_0313 0.63 +2.6 379,100 + Sama_0313 0.63 +0.8 379,100 + Sama_0313 0.63 +0.3 379,101 - Sama_0313 0.63 -1.1 379,101 - Sama_0313 0.63 +1.6 379,218 + Sama_0313 0.78 +0.1 379,218 + Sama_0313 0.78 +0.8 379,218 + Sama_0313 0.78 +0.0 379,218 + Sama_0313 0.78 +1.6 379,218 + Sama_0313 0.78 -0.1 379,218 + Sama_0313 0.78 +1.6 379,218 + Sama_0313 0.78 -0.3 379,218 + Sama_0313 0.78 -0.7 379,218 + Sama_0313 0.78 -1.2 379,218 + Sama_0313 0.78 -0.3 379,219 - Sama_0313 0.79 -1.1 379,219 - Sama_0313 0.79 -0.7 379,219 - Sama_0313 0.79 +0.4 379,219 - Sama_0313 0.79 -1.1 379,221 - Sama_0313 0.79 +0.1 379,221 - Sama_0313 0.79 -0.1 379,221 - Sama_0313 0.79 -0.7 379,221 - Sama_0313 0.79 -0.8 379,221 - Sama_0313 0.79 -1.6 379,253 - Sama_0313 0.83 -1.2 379,290 + Sama_0313 0.88 +0.3 379,290 + Sama_0313 0.88 +0.3 379,341 - -0.7 379,439 + -0.9 379,440 - -0.6 379,440 - +0.0 379,440 - +0.3 379,440 - +0.8 379,468 - +0.6 379,477 - -0.5 379,477 - -1.8 379,530 + -0.5 379,530 + -1.1 379,553 + -0.4 379,592 + Sama_0314 0.13 -0.3 379,598 - Sama_0314 0.15 +0.6 379,599 + Sama_0314 0.15 -2.7 379,599 + Sama_0314 0.15 -0.9 379,619 - Sama_0314 0.23 +0.3 379,619 - Sama_0314 0.23 -1.3 379,634 + Sama_0314 0.28 +0.8 379,635 - Sama_0314 0.28 +1.1 379,648 + Sama_0314 0.33 +1.6 379,673 + Sama_0314 0.42 -0.9 379,690 - Sama_0314 0.48 -0.3 379,690 - Sama_0314 0.48 +0.6 379,693 + Sama_0314 0.49 +0.9 379,693 + Sama_0314 0.49 -0.4 379,693 + Sama_0314 0.49 +1.9 379,700 - Sama_0314 0.52 +0.0 379,712 + Sama_0314 0.56 -0.2 379,713 - Sama_0314 0.56 +0.3 379,748 - Sama_0314 0.69 +0.5 379,774 + Sama_0314 0.78 +1.4 379,799 - Sama_0314 0.87 +1.0 379,834 + +0.1 379,835 - -1.0 379,835 - +0.1 379,837 - +0.1 379,873 + -0.6 379,874 - -0.9 379,988 - +0.8 379,988 - +2.3 380,008 + -1.0 380,101 + +0.5 380,120 - -0.1 380,123 - +0.8 380,141 + +1.0 380,142 - -0.6 380,142 - +12.9 380,190 + +0.1 380,193 + +1.4 380,193 + +1.6 380,233 + -0.6 380,234 - +0.4 380,242 + +0.0 380,309 + -1.2 380,310 - +1.5 380,343 - -0.8 380,352 + +1.6 380,353 - +2.0 380,353 - +1.3 380,358 + +1.0 380,359 - +1.6 380,370 + +1.0 380,371 - -0.4 380,371 - -1.4 380,452 + Sama_0315 0.12 +1.1 380,452 + Sama_0315 0.12 -0.7 380,500 + Sama_0315 0.20 -0.2 380,500 + Sama_0315 0.20 -0.7 380,500 + Sama_0315 0.20 +0.0 380,500 + Sama_0315 0.20 +1.6 380,500 + Sama_0315 0.20 -0.3 380,500 + Sama_0315 0.20 -0.2 380,511 + Sama_0315 0.22 -0.2 380,512 - Sama_0315 0.22 +1.6 380,543 + Sama_0315 0.27 +0.3 380,543 + Sama_0315 0.27 +0.5 380,629 - Sama_0315 0.42 +0.8 380,629 - Sama_0315 0.42 -0.9 380,629 - Sama_0315 0.42 +1.1 380,629 - Sama_0315 0.42 +0.3 380,633 - Sama_0315 0.42 -0.9 380,685 + Sama_0315 0.51 +0.8 380,776 + Sama_0315 0.66 -2.1 380,776 + Sama_0315 0.66 +0.3 380,797 + Sama_0315 0.70 -0.6 380,797 + Sama_0315 0.70 +0.9 380,803 + Sama_0315 0.71 -1.5 380,803 + Sama_0315 0.71 -1.7 380,804 - Sama_0315 0.71 +2.3 380,804 - Sama_0315 0.71 +1.1 380,804 - Sama_0315 0.71 -0.6 380,804 - Sama_0315 0.71 +0.3 380,830 + Sama_0315 0.76 -0.4
Or see this region's nucleotide sequence