Strain Fitness in Shewanella loihica PV-4 around Shew_2169

Experiment: sodium fluoride 100 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2166 and Shew_2167 are separated by 126 nucleotidesShew_2167 and Shew_2168 are separated by 21 nucleotidesShew_2168 and Shew_2169 are separated by 199 nucleotidesShew_2169 and Shew_2170 are separated by 287 nucleotides Shew_2166: Shew_2166 - hypothetical protein (RefSeq), at 2,517,223 to 2,521,146 _2166 Shew_2167: Shew_2167 - hypothetical protein (RefSeq), at 2,521,273 to 2,521,473 _2167 Shew_2168: Shew_2168 - hypothetical protein (RefSeq), at 2,521,495 to 2,521,815 _2168 Shew_2169: Shew_2169 - hypothetical protein (RefSeq), at 2,522,015 to 2,522,944 _2169 Shew_2170: Shew_2170 - endonuclease/exonuclease/phosphatase (RefSeq), at 2,523,232 to 2,526,069 _2170 Position (kb) 2522 2523Strain fitness (log2 ratio) -2 -1 0 1at 2521.212 kb on + strandat 2521.306 kb on - strand, within Shew_2167at 2521.599 kb on + strand, within Shew_2168at 2521.599 kb on + strand, within Shew_2168at 2521.705 kb on + strand, within Shew_2168at 2522.376 kb on + strand, within Shew_2169at 2522.581 kb on - strand, within Shew_2169at 2522.754 kb on + strand, within Shew_2169at 2522.946 kb on + strandat 2523.745 kb on + strand, within Shew_2170at 2523.893 kb on + strand, within Shew_2170

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Per-strain Table

Position Strand Gene LocusTag Fraction sodium fluoride 100 mM
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2,521,212 + -0.5
2,521,306 - Shew_2167 0.16 +0.6
2,521,599 + Shew_2168 0.32 +0.0
2,521,599 + Shew_2168 0.32 +0.1
2,521,705 + Shew_2168 0.65 +0.9
2,522,376 + Shew_2169 0.39 -0.4
2,522,581 - Shew_2169 0.61 +0.0
2,522,754 + Shew_2169 0.79 -1.8
2,522,946 + +0.4
2,523,745 + Shew_2170 0.18 -0.6
2,523,893 + Shew_2170 0.23 -0.5

Or see this region's nucleotide sequence