Experiment: sodium fluoride 100 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2155 and Shew_2156 are separated by 126 nucleotides Shew_2156 and Shew_2157 are separated by 40 nucleotides Shew_2157 and Shew_2158 are separated by 118 nucleotides
Shew_2155: Shew_2155 - 4-hydroxyphenylpyruvate dioxygenase (RefSeq), at 2,499,904 to 2,500,944
_2155
Shew_2156: Shew_2156 - lysine exporter protein LysE/YggA (RefSeq), at 2,501,071 to 2,501,688
_2156
Shew_2157: Shew_2157 - hypothetical protein (RefSeq), at 2,501,729 to 2,503,096
_2157
Shew_2158: Shew_2158 - gamma-glutamyltransferase (RefSeq), at 2,503,215 to 2,504,945
_2158
Position (kb)
2501
2502
2503
2504 Strain fitness (log2 ratio)
-1
0
1 at 2501.139 kb on - strand, within Shew_2156 at 2501.177 kb on - strand, within Shew_2156 at 2501.450 kb on - strand, within Shew_2156 at 2502.218 kb on + strand, within Shew_2157 at 2502.525 kb on - strand, within Shew_2157 at 2502.904 kb on - strand, within Shew_2157 at 2502.983 kb on + strand at 2503.117 kb on - strand at 2503.265 kb on + strand at 2503.351 kb on - strand at 2503.463 kb on + strand, within Shew_2158 at 2503.595 kb on + strand, within Shew_2158 at 2503.919 kb on - strand, within Shew_2158
Per-strain Table
Position Strand Gene LocusTag Fraction sodium fluoride 100 mM remove 2,501,139 - Shew_2156 0.11 +0.1 2,501,177 - Shew_2156 0.17 -1.2 2,501,450 - Shew_2156 0.61 +0.1 2,502,218 + Shew_2157 0.36 -1.0 2,502,525 - Shew_2157 0.58 +1.6 2,502,904 - Shew_2157 0.86 +1.2 2,502,983 + +0.2 2,503,117 - +0.3 2,503,265 + -0.2 2,503,351 - +0.6 2,503,463 + Shew_2158 0.14 +0.3 2,503,595 + Shew_2158 0.22 +0.8 2,503,919 - Shew_2158 0.41 -0.8
Or see this region's nucleotide sequence