Experiment: sodium fluoride 100 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1694 and Shew_1695 are separated by 92 nucleotides Shew_1695 and Shew_1696 are separated by 650 nucleotides
Shew_1694: Shew_1694 - hypothetical protein (RefSeq), at 1,948,145 to 1,948,657
_1694
Shew_1695: Shew_1695 - hypothetical protein (RefSeq), at 1,948,750 to 1,949,097
_1695
Shew_1696: Shew_1696 - hypothetical protein (RefSeq), at 1,949,748 to 1,950,644
_1696
Position (kb) 1948
1949
1950 Strain fitness (log2 ratio) -1
0
1
2 at 1947.864 kb on - strand at 1947.941 kb on + strand at 1948.121 kb on - strand at 1948.198 kb on + strand, within Shew_1694 at 1948.206 kb on - strand, within Shew_1694 at 1948.251 kb on - strand, within Shew_1694 at 1948.256 kb on - strand, within Shew_1694 at 1948.285 kb on + strand, within Shew_1694 at 1948.293 kb on - strand, within Shew_1694 at 1948.387 kb on - strand, within Shew_1694 at 1948.434 kb on - strand, within Shew_1694 at 1948.544 kb on - strand, within Shew_1694 at 1948.722 kb on - strand at 1948.724 kb on + strand at 1948.724 kb on + strand at 1948.724 kb on + strand at 1948.724 kb on + strand at 1948.724 kb on + strand at 1948.724 kb on + strand at 1948.724 kb on + strand at 1948.724 kb on + strand at 1948.724 kb on + strand at 1948.724 kb on + strand at 1948.724 kb on + strand at 1948.724 kb on + strand at 1948.724 kb on + strand at 1948.724 kb on + strand at 1948.724 kb on + strand at 1948.732 kb on - strand at 1948.732 kb on - strand at 1948.732 kb on - strand at 1948.732 kb on - strand at 1948.732 kb on - strand at 1948.732 kb on - strand at 1948.732 kb on - strand at 1948.732 kb on - strand at 1948.732 kb on - strand at 1948.732 kb on - strand at 1948.732 kb on - strand at 1948.732 kb on - strand at 1948.732 kb on - strand at 1948.732 kb on - strand at 1948.787 kb on + strand, within Shew_1695 at 1948.795 kb on - strand, within Shew_1695 at 1948.795 kb on - strand, within Shew_1695 at 1948.795 kb on - strand, within Shew_1695 at 1948.795 kb on - strand, within Shew_1695 at 1949.031 kb on - strand, within Shew_1695 at 1949.093 kb on + strand at 1949.101 kb on + strand at 1949.101 kb on - strand at 1949.101 kb on - strand at 1949.101 kb on + strand at 1949.163 kb on + strand at 1949.166 kb on - strand at 1949.217 kb on + strand at 1949.217 kb on + strand at 1949.230 kb on - strand at 1949.231 kb on - strand at 1949.316 kb on + strand at 1949.324 kb on - strand at 1949.382 kb on - strand at 1949.518 kb on + strand at 1949.583 kb on + strand at 1949.789 kb on + strand at 1949.888 kb on + strand, within Shew_1696 at 1949.901 kb on - strand, within Shew_1696
Per-strain Table
Position Strand Gene LocusTag Fraction sodium fluoride 100 mM remove 1,947,864 - -1.2 1,947,941 + -0.2 1,948,121 - -0.2 1,948,198 + Shew_1694 0.10 -1.1 1,948,206 - Shew_1694 0.12 +0.7 1,948,251 - Shew_1694 0.21 -0.7 1,948,256 - Shew_1694 0.22 +0.3 1,948,285 + Shew_1694 0.27 +0.0 1,948,293 - Shew_1694 0.29 +1.1 1,948,387 - Shew_1694 0.47 +0.0 1,948,434 - Shew_1694 0.56 +2.1 1,948,544 - Shew_1694 0.78 +0.1 1,948,722 - -0.5 1,948,724 + -0.5 1,948,724 + +0.1 1,948,724 + +0.2 1,948,724 + +0.2 1,948,724 + +0.4 1,948,724 + -0.9 1,948,724 + +0.1 1,948,724 + +1.1 1,948,724 + +1.1 1,948,724 + +0.1 1,948,724 + -0.0 1,948,724 + +0.1 1,948,724 + +0.2 1,948,724 + -0.4 1,948,724 + +0.9 1,948,732 - -0.1 1,948,732 - +0.3 1,948,732 - -0.4 1,948,732 - +0.4 1,948,732 - +0.9 1,948,732 - -0.1 1,948,732 - +0.7 1,948,732 - -0.6 1,948,732 - -0.5 1,948,732 - +0.1 1,948,732 - +0.5 1,948,732 - +0.4 1,948,732 - -0.5 1,948,732 - -0.0 1,948,787 + Shew_1695 0.11 +0.0 1,948,795 - Shew_1695 0.13 -0.0 1,948,795 - Shew_1695 0.13 -0.8 1,948,795 - Shew_1695 0.13 -1.4 1,948,795 - Shew_1695 0.13 -1.3 1,949,031 - Shew_1695 0.81 -1.0 1,949,093 + +0.1 1,949,101 + +0.1 1,949,101 - -0.2 1,949,101 - -0.1 1,949,101 + -0.5 1,949,163 + +0.1 1,949,166 - -0.9 1,949,217 + +1.9 1,949,217 + -0.3 1,949,230 - -0.1 1,949,231 - -1.7 1,949,316 + -0.3 1,949,324 - -0.6 1,949,382 - +0.1 1,949,518 + -0.4 1,949,583 + -0.7 1,949,789 + -0.9 1,949,888 + Shew_1696 0.16 -0.0 1,949,901 - Shew_1696 0.17 +0.3
Or see this region's nucleotide sequence