Experiment: sodium fluoride 100 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0759 and Shew_0760 are separated by 458 nucleotides Shew_0760 and Shew_0761 overlap by 8 nucleotides Shew_0761 and Shew_0762 are separated by 69 nucleotides
Shew_0759: Shew_0759 - cytochrome c, putative (RefSeq), at 860,299 to 861,120
_0759
Shew_0760: Shew_0760 - response regulator receiver protein (RefSeq), at 861,579 to 862,400
_0760
Shew_0761: Shew_0761 - hypothetical protein (RefSeq), at 862,393 to 862,914
_0761
Shew_0762: Shew_0762 - hypothetical protein (RefSeq), at 862,984 to 864,405
_0762
Position (kb) 861
862
863 Strain fitness (log2 ratio) -1
0
1 at 860.705 kb on + strand, within Shew_0759 at 861.054 kb on - strand at 861.545 kb on + strand at 862.000 kb on + strand, within Shew_0760 at 862.008 kb on - strand, within Shew_0760 at 862.108 kb on + strand, within Shew_0760 at 862.321 kb on + strand at 862.508 kb on + strand, within Shew_0761 at 862.508 kb on + strand, within Shew_0761 at 862.508 kb on + strand, within Shew_0761 at 862.516 kb on - strand, within Shew_0761 at 862.805 kb on - strand, within Shew_0761 at 862.878 kb on + strand at 862.898 kb on + strand at 862.923 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction sodium fluoride 100 mM remove 860,705 + Shew_0759 0.49 -0.1 861,054 - +0.3 861,545 + -0.1 862,000 + Shew_0760 0.51 -0.7 862,008 - Shew_0760 0.52 -0.1 862,108 + Shew_0760 0.64 -1.1 862,321 + +1.4 862,508 + Shew_0761 0.22 -0.9 862,508 + Shew_0761 0.22 +0.5 862,508 + Shew_0761 0.22 +0.7 862,516 - Shew_0761 0.24 -0.5 862,805 - Shew_0761 0.79 +0.2 862,878 + -0.7 862,898 + +0.2 862,923 + -0.1
Or see this region's nucleotide sequence