Experiment: sodium fluoride 100 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0568 and Shew_0569 are separated by 2 nucleotides Shew_0569 and Shew_0570 are separated by 334 nucleotides Shew_0570 and Shew_0571 overlap by 1 nucleotides
Shew_0568: Shew_0568 - HflK protein (RefSeq), at 643,813 to 644,955
_0568
Shew_0569: Shew_0569 - HflC protein (RefSeq), at 644,958 to 645,836
_0569
Shew_0570: Shew_0570 - ubiquinol-cytochrome c reductase, iron-sulfur subunit (RefSeq), at 646,171 to 646,761
_0570
Shew_0571: Shew_0571 - cytochrome b/b6 domain-containing protein (RefSeq), at 646,761 to 647,975
_0571
Position (kb) 644
645
646 Strain fitness (log2 ratio) -2
-1
0
1 at 643.981 kb on + strand, within Shew_0568 at 644.378 kb on + strand, within Shew_0568 at 644.606 kb on + strand, within Shew_0568 at 644.606 kb on + strand, within Shew_0568 at 645.527 kb on + strand, within Shew_0569 at 645.680 kb on + strand, within Shew_0569 at 645.766 kb on + strand at 645.766 kb on + strand at 645.766 kb on + strand at 645.772 kb on + strand at 646.601 kb on - strand, within Shew_0570 at 646.783 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction sodium fluoride 100 mM remove 643,981 + Shew_0568 0.15 -1.0 644,378 + Shew_0568 0.49 -1.0 644,606 + Shew_0568 0.69 +0.3 644,606 + Shew_0568 0.69 -0.8 645,527 + Shew_0569 0.65 -0.9 645,680 + Shew_0569 0.82 -1.1 645,766 + -0.1 645,766 + +0.6 645,766 + -0.1 645,772 + -0.1 646,601 - Shew_0570 0.73 -1.9 646,783 + -0.8
Or see this region's nucleotide sequence