Experiment: sodium fluoride 100 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0370 and Shew_0371 are separated by 124 nucleotides Shew_0371 and Shew_0372 are separated by 94 nucleotides Shew_0372 and Shew_0373 are separated by 21 nucleotides
Shew_0370: Shew_0370 - protoheme IX farnesyltransferase (RefSeq), at 418,183 to 419,109
_0370
Shew_0371: Shew_0371 - AraC family transcriptional regulator (RefSeq), at 419,234 to 420,100
_0371
Shew_0372: Shew_0372 - hypothetical protein (RefSeq), at 420,195 to 420,629
_0372
Shew_0373: Shew_0373 - hypothetical protein (RefSeq), at 420,651 to 421,046
_0373
Position (kb) 419
420
421 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 418.505 kb on + strand, within Shew_0370 at 418.670 kb on - strand, within Shew_0370 at 419.036 kb on - strand at 419.164 kb on + strand at 419.466 kb on + strand, within Shew_0371 at 419.761 kb on + strand, within Shew_0371 at 419.890 kb on + strand, within Shew_0371 at 420.095 kb on + strand at 420.254 kb on + strand, within Shew_0372 at 420.343 kb on + strand, within Shew_0372 at 420.613 kb on + strand at 420.780 kb on + strand, within Shew_0373 at 420.886 kb on + strand, within Shew_0373 at 420.886 kb on + strand, within Shew_0373 at 421.058 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction sodium fluoride 100 mM remove 418,505 + Shew_0370 0.35 +0.2 418,670 - Shew_0370 0.53 -0.1 419,036 - +0.3 419,164 + -0.0 419,466 + Shew_0371 0.27 -1.9 419,761 + Shew_0371 0.61 -0.4 419,890 + Shew_0371 0.76 -0.6 420,095 + -3.4 420,254 + Shew_0372 0.14 +2.3 420,343 + Shew_0372 0.34 -0.5 420,613 + +0.9 420,780 + Shew_0373 0.33 +0.0 420,886 + Shew_0373 0.59 +0.2 420,886 + Shew_0373 0.59 +1.7 421,058 + -0.9
Or see this region's nucleotide sequence