Experiment: casaminos as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_72 and HP15_73 are separated by 846 nucleotides HP15_73 and HP15_74 are separated by 278 nucleotides HP15_74 and HP15_75 overlap by 4 nucleotides
HP15_72: HP15_72 - conserved hypothetical protein, at 79,782 to 80,045
_72
HP15_73: HP15_73 - hypothetical protein, at 80,892 to 81,146
_73
HP15_74: HP15_74 - hypothetical protein, at 81,425 to 81,820
_74
HP15_75: HP15_75 - conserved hypothetical protein, at 81,817 to 84,126
_75
Position (kb)
80
81
82 Strain fitness (log2 ratio)
-1
0
1
2 at 79.954 kb on - strand, within HP15_72 at 80.050 kb on + strand at 80.050 kb on + strand at 80.050 kb on + strand at 80.053 kb on + strand at 80.053 kb on + strand at 80.110 kb on + strand at 80.111 kb on + strand at 80.130 kb on + strand at 80.138 kb on - strand at 80.267 kb on + strand at 80.309 kb on + strand at 80.347 kb on + strand at 80.419 kb on + strand at 80.419 kb on + strand at 80.427 kb on - strand at 80.444 kb on + strand at 80.444 kb on + strand at 80.713 kb on + strand at 80.713 kb on + strand at 80.721 kb on + strand at 80.721 kb on - strand at 80.721 kb on - strand at 80.771 kb on - strand at 80.781 kb on - strand at 80.786 kb on - strand at 80.815 kb on + strand at 80.912 kb on - strand at 80.921 kb on - strand, within HP15_73 at 80.921 kb on - strand, within HP15_73 at 80.935 kb on + strand, within HP15_73 at 80.945 kb on + strand, within HP15_73 at 80.965 kb on + strand, within HP15_73 at 80.973 kb on - strand, within HP15_73 at 80.973 kb on - strand, within HP15_73 at 81.050 kb on + strand, within HP15_73 at 81.135 kb on + strand at 81.143 kb on - strand at 81.195 kb on + strand at 81.202 kb on - strand at 81.292 kb on + strand at 81.293 kb on - strand at 81.345 kb on + strand at 81.423 kb on + strand at 81.463 kb on + strand at 81.463 kb on + strand at 81.470 kb on + strand, within HP15_74 at 81.497 kb on - strand, within HP15_74 at 81.507 kb on - strand, within HP15_74 at 81.513 kb on + strand, within HP15_74 at 81.534 kb on + strand, within HP15_74 at 81.559 kb on - strand, within HP15_74 at 81.559 kb on - strand, within HP15_74 at 81.579 kb on + strand, within HP15_74 at 81.611 kb on - strand, within HP15_74 at 81.759 kb on - strand, within HP15_74 at 81.777 kb on - strand, within HP15_74 at 81.851 kb on - strand at 81.864 kb on + strand at 81.951 kb on - strand at 81.959 kb on - strand at 82.024 kb on + strand at 82.113 kb on + strand, within HP15_75
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos as (N) remove 79,954 - HP15_72 0.65 +2.1 80,050 + -0.7 80,050 + -0.2 80,050 + -0.6 80,053 + +0.3 80,053 + -0.4 80,110 + -0.6 80,111 + -0.1 80,130 + +1.7 80,138 - +1.9 80,267 + -1.0 80,309 + +0.7 80,347 + -1.1 80,419 + -0.2 80,419 + -1.3 80,427 - -0.2 80,444 + +1.7 80,444 + +0.9 80,713 + -0.3 80,713 + -0.5 80,721 + +1.7 80,721 - -0.3 80,721 - -0.9 80,771 - +1.4 80,781 - -0.2 80,786 - +1.6 80,815 + -0.2 80,912 - -0.3 80,921 - HP15_73 0.11 -0.7 80,921 - HP15_73 0.11 +1.7 80,935 + HP15_73 0.17 +0.7 80,945 + HP15_73 0.21 +2.1 80,965 + HP15_73 0.29 +1.4 80,973 - HP15_73 0.32 +0.2 80,973 - HP15_73 0.32 +1.4 81,050 + HP15_73 0.62 +1.6 81,135 + +2.4 81,143 - -0.0 81,195 + -0.7 81,202 - -1.2 81,292 + +2.4 81,293 - +2.1 81,345 + +2.6 81,423 + +1.6 81,463 + -0.4 81,463 + -0.6 81,470 + HP15_74 0.11 +0.9 81,497 - HP15_74 0.18 +1.7 81,507 - HP15_74 0.21 +0.7 81,513 + HP15_74 0.22 +1.5 81,534 + HP15_74 0.28 -1.0 81,559 - HP15_74 0.34 +1.7 81,559 - HP15_74 0.34 -0.0 81,579 + HP15_74 0.39 +2.2 81,611 - HP15_74 0.47 -0.6 81,759 - HP15_74 0.84 -0.5 81,777 - HP15_74 0.89 +1.7 81,851 - -0.7 81,864 + +1.7 81,951 - -0.7 81,959 - -0.3 82,024 + -0.7 82,113 + HP15_75 0.13 +0.0
Or see this region's nucleotide sequence