Experiment: casaminos as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_662 and HP15_663 overlap by 8 nucleotides HP15_663 and HP15_664 overlap by 1 nucleotides HP15_664 and HP15_665 are separated by 51 nucleotides HP15_665 and HP15_666 overlap by 1 nucleotides
HP15_662: HP15_662 - phage tail protein I, at 684,061 to 684,636
_662
HP15_663: HP15_663 - phage baseplate assembly protein, at 684,629 to 685,549
_663
HP15_664: HP15_664 - GPW/gp25, at 685,549 to 685,887
_664
HP15_665: HP15_665 - phage-related baseplate assembly protein V, at 685,939 to 686,724
_665
HP15_666: HP15_666 - conserved hypothetical protein, at 686,724 to 687,284
_666
Position (kb) 685
686 Strain fitness (log2 ratio) -1
0
1
2 at 684.567 kb on + strand, within HP15_662 at 684.635 kb on - strand at 684.682 kb on + strand at 684.716 kb on + strand at 684.721 kb on + strand, within HP15_663 at 684.721 kb on + strand, within HP15_663 at 684.721 kb on + strand, within HP15_663 at 684.729 kb on - strand, within HP15_663 at 684.746 kb on + strand, within HP15_663 at 684.773 kb on + strand, within HP15_663 at 684.901 kb on - strand, within HP15_663 at 684.968 kb on + strand, within HP15_663 at 684.970 kb on + strand, within HP15_663 at 684.976 kb on - strand, within HP15_663 at 684.976 kb on - strand, within HP15_663 at 684.976 kb on - strand, within HP15_663 at 685.009 kb on + strand, within HP15_663 at 685.030 kb on - strand, within HP15_663 at 685.059 kb on + strand, within HP15_663 at 685.093 kb on + strand, within HP15_663 at 685.131 kb on + strand, within HP15_663 at 685.139 kb on - strand, within HP15_663 at 685.209 kb on + strand, within HP15_663 at 685.275 kb on - strand, within HP15_663 at 685.275 kb on - strand, within HP15_663 at 685.437 kb on + strand, within HP15_663 at 685.452 kb on + strand, within HP15_663 at 685.460 kb on - strand at 685.462 kb on + strand at 685.565 kb on - strand at 685.615 kb on + strand, within HP15_664 at 685.689 kb on - strand, within HP15_664 at 685.690 kb on + strand, within HP15_664 at 685.735 kb on - strand, within HP15_664 at 685.777 kb on - strand, within HP15_664 at 685.889 kb on - strand at 686.031 kb on + strand, within HP15_665 at 686.103 kb on - strand, within HP15_665 at 686.174 kb on - strand, within HP15_665 at 686.397 kb on + strand, within HP15_665 at 686.428 kb on + strand, within HP15_665 at 686.428 kb on + strand, within HP15_665 at 686.428 kb on + strand, within HP15_665 at 686.428 kb on + strand, within HP15_665 at 686.428 kb on + strand, within HP15_665 at 686.436 kb on - strand, within HP15_665 at 686.436 kb on - strand, within HP15_665 at 686.436 kb on - strand, within HP15_665 at 686.436 kb on - strand, within HP15_665 at 686.436 kb on - strand, within HP15_665 at 686.456 kb on + strand, within HP15_665 at 686.456 kb on + strand, within HP15_665 at 686.459 kb on - strand, within HP15_665 at 686.469 kb on + strand, within HP15_665 at 686.492 kb on + strand, within HP15_665 at 686.618 kb on + strand, within HP15_665 at 686.709 kb on + strand at 686.741 kb on - strand at 686.766 kb on + strand at 686.777 kb on + strand at 686.787 kb on - strand, within HP15_666 at 686.802 kb on - strand, within HP15_666 at 686.809 kb on - strand, within HP15_666 at 686.839 kb on + strand, within HP15_666 at 686.872 kb on + strand, within HP15_666 at 686.872 kb on + strand, within HP15_666 at 686.880 kb on - strand, within HP15_666
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos as (N) remove 684,567 + HP15_662 0.88 -0.1 684,635 - -0.2 684,682 + -0.4 684,716 + +2.0 684,721 + HP15_663 0.10 -0.6 684,721 + HP15_663 0.10 +2.6 684,721 + HP15_663 0.10 +2.0 684,729 - HP15_663 0.11 +0.2 684,746 + HP15_663 0.13 +2.4 684,773 + HP15_663 0.16 +0.5 684,901 - HP15_663 0.30 -0.7 684,968 + HP15_663 0.37 -0.1 684,970 + HP15_663 0.37 -0.3 684,976 - HP15_663 0.38 +0.4 684,976 - HP15_663 0.38 +0.3 684,976 - HP15_663 0.38 +0.5 685,009 + HP15_663 0.41 -0.4 685,030 - HP15_663 0.44 -0.5 685,059 + HP15_663 0.47 +1.0 685,093 + HP15_663 0.50 +1.0 685,131 + HP15_663 0.55 -0.1 685,139 - HP15_663 0.55 -0.5 685,209 + HP15_663 0.63 +0.6 685,275 - HP15_663 0.70 +2.3 685,275 - HP15_663 0.70 +0.1 685,437 + HP15_663 0.88 +2.4 685,452 + HP15_663 0.89 +2.1 685,460 - +0.9 685,462 + -0.2 685,565 - +2.0 685,615 + HP15_664 0.19 -0.3 685,689 - HP15_664 0.41 -0.5 685,690 + HP15_664 0.42 -0.9 685,735 - HP15_664 0.55 -0.1 685,777 - HP15_664 0.67 +1.1 685,889 - +0.5 686,031 + HP15_665 0.12 +1.4 686,103 - HP15_665 0.21 +0.0 686,174 - HP15_665 0.30 +1.1 686,397 + HP15_665 0.58 +0.0 686,428 + HP15_665 0.62 +0.2 686,428 + HP15_665 0.62 -0.0 686,428 + HP15_665 0.62 +0.3 686,428 + HP15_665 0.62 +2.4 686,428 + HP15_665 0.62 +2.1 686,436 - HP15_665 0.63 +0.7 686,436 - HP15_665 0.63 -0.0 686,436 - HP15_665 0.63 -0.8 686,436 - HP15_665 0.63 -1.4 686,436 - HP15_665 0.63 +0.6 686,456 + HP15_665 0.66 +0.2 686,456 + HP15_665 0.66 -1.2 686,459 - HP15_665 0.66 -0.9 686,469 + HP15_665 0.67 -0.3 686,492 + HP15_665 0.70 +0.1 686,618 + HP15_665 0.86 +1.5 686,709 + +0.1 686,741 - +1.2 686,766 + +1.2 686,777 + -0.4 686,787 - HP15_666 0.11 +0.2 686,802 - HP15_666 0.14 -0.8 686,809 - HP15_666 0.15 +0.3 686,839 + HP15_666 0.20 -0.4 686,872 + HP15_666 0.26 -1.7 686,872 + HP15_666 0.26 +0.0 686,880 - HP15_666 0.28 +2.3
Or see this region's nucleotide sequence