Experiment: casaminos as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_47 and HP15_48 overlap by 4 nucleotides HP15_48 and HP15_49 overlap by 4 nucleotides HP15_49 and HP15_50 are separated by 179 nucleotides
HP15_47: HP15_47 - fumarylacetoacetate (FAA) hydrolase, at 51,081 to 51,947
_47
HP15_48: HP15_48 - 3-hydroxybutyryl-CoA dehydrogenase, at 51,944 to 52,849
_48
HP15_49: HP15_49 - acetyl-CoA acetyltransferase, at 52,846 to 54,021
_49
HP15_50: HP15_50 - hypothetical protein, at 54,201 to 54,554
_50
Position (kb) 52
53
54
55 Strain fitness (log2 ratio) -1
0
1
2
3
4
5 at 51.860 kb on + strand, within HP15_47 at 51.976 kb on - strand at 52.028 kb on + strand at 52.030 kb on + strand at 52.051 kb on - strand, within HP15_48 at 52.056 kb on + strand, within HP15_48 at 52.084 kb on - strand, within HP15_48 at 52.223 kb on - strand, within HP15_48 at 52.311 kb on - strand, within HP15_48 at 52.396 kb on + strand, within HP15_48 at 52.409 kb on + strand, within HP15_48 at 52.444 kb on - strand, within HP15_48 at 52.455 kb on + strand, within HP15_48 at 52.455 kb on + strand, within HP15_48 at 52.465 kb on + strand, within HP15_48 at 52.465 kb on + strand, within HP15_48 at 52.538 kb on + strand, within HP15_48 at 52.561 kb on - strand, within HP15_48 at 52.574 kb on + strand, within HP15_48 at 52.624 kb on - strand, within HP15_48 at 52.627 kb on + strand, within HP15_48 at 52.667 kb on + strand, within HP15_48 at 52.676 kb on - strand, within HP15_48 at 52.698 kb on + strand, within HP15_48 at 52.779 kb on + strand at 52.793 kb on - strand at 52.834 kb on + strand at 52.841 kb on - strand at 52.913 kb on + strand at 52.919 kb on + strand at 52.999 kb on + strand, within HP15_49 at 53.058 kb on + strand, within HP15_49 at 53.059 kb on - strand, within HP15_49 at 53.059 kb on - strand, within HP15_49 at 53.059 kb on - strand, within HP15_49 at 53.078 kb on + strand, within HP15_49 at 53.081 kb on - strand, within HP15_49 at 53.128 kb on + strand, within HP15_49 at 53.128 kb on + strand, within HP15_49 at 53.128 kb on + strand, within HP15_49 at 53.128 kb on + strand, within HP15_49 at 53.136 kb on - strand, within HP15_49 at 53.136 kb on - strand, within HP15_49 at 53.136 kb on - strand, within HP15_49 at 53.136 kb on - strand, within HP15_49 at 53.136 kb on - strand, within HP15_49 at 53.136 kb on - strand, within HP15_49 at 53.233 kb on - strand, within HP15_49 at 53.237 kb on + strand, within HP15_49 at 53.297 kb on - strand, within HP15_49 at 53.338 kb on - strand, within HP15_49 at 53.736 kb on - strand, within HP15_49 at 53.736 kb on - strand, within HP15_49 at 53.819 kb on - strand, within HP15_49 at 53.824 kb on - strand, within HP15_49 at 53.824 kb on - strand, within HP15_49 at 53.826 kb on + strand, within HP15_49 at 53.826 kb on + strand, within HP15_49 at 53.872 kb on + strand, within HP15_49 at 53.878 kb on + strand, within HP15_49 at 53.883 kb on + strand, within HP15_49 at 53.884 kb on + strand, within HP15_49 at 53.885 kb on - strand, within HP15_49 at 53.999 kb on + strand at 54.036 kb on + strand at 54.103 kb on + strand at 54.103 kb on + strand at 54.125 kb on - strand at 54.158 kb on + strand at 54.161 kb on - strand at 54.207 kb on + strand at 54.207 kb on + strand at 54.215 kb on - strand at 54.257 kb on - strand, within HP15_50 at 54.292 kb on - strand, within HP15_50 at 54.332 kb on + strand, within HP15_50 at 54.332 kb on + strand, within HP15_50 at 54.341 kb on - strand, within HP15_50 at 54.464 kb on + strand, within HP15_50 at 54.500 kb on - strand, within HP15_50 at 54.545 kb on + strand at 54.553 kb on - strand at 54.553 kb on - strand at 54.558 kb on + strand at 54.566 kb on - strand at 54.580 kb on + strand at 54.580 kb on + strand at 54.635 kb on + strand at 54.635 kb on + strand at 54.643 kb on - strand at 54.644 kb on - strand at 54.649 kb on - strand at 54.697 kb on - strand at 54.697 kb on - strand at 54.740 kb on - strand at 54.741 kb on + strand at 54.772 kb on + strand at 54.811 kb on + strand at 54.824 kb on - strand at 54.834 kb on - strand at 54.851 kb on + strand at 54.857 kb on + strand at 54.879 kb on + strand at 54.879 kb on + strand at 54.879 kb on + strand at 54.884 kb on + strand at 54.884 kb on + strand at 54.887 kb on - strand at 54.887 kb on - strand at 54.892 kb on - strand at 54.892 kb on - strand at 54.892 kb on - strand at 54.896 kb on + strand at 54.899 kb on - strand at 54.899 kb on - strand at 54.904 kb on - strand at 54.904 kb on - strand at 54.904 kb on - strand at 54.915 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos as (N) remove 51,860 + HP15_47 0.90 +1.7 51,976 - -0.9 52,028 + +0.2 52,030 + -0.5 52,051 - HP15_48 0.12 -0.4 52,056 + HP15_48 0.12 +2.2 52,084 - HP15_48 0.15 +0.3 52,223 - HP15_48 0.31 -0.7 52,311 - HP15_48 0.41 -0.5 52,396 + HP15_48 0.50 -1.2 52,409 + HP15_48 0.51 +2.2 52,444 - HP15_48 0.55 +2.2 52,455 + HP15_48 0.56 -1.2 52,455 + HP15_48 0.56 -0.3 52,465 + HP15_48 0.58 +2.0 52,465 + HP15_48 0.58 -0.2 52,538 + HP15_48 0.66 -0.8 52,561 - HP15_48 0.68 +1.9 52,574 + HP15_48 0.70 -0.2 52,624 - HP15_48 0.75 -0.9 52,627 + HP15_48 0.75 +1.3 52,667 + HP15_48 0.80 +2.2 52,676 - HP15_48 0.81 +1.8 52,698 + HP15_48 0.83 +1.0 52,779 + -0.1 52,793 - -1.3 52,834 + +0.2 52,841 - -0.5 52,913 + +1.2 52,919 + -0.0 52,999 + HP15_49 0.13 +1.1 53,058 + HP15_49 0.18 -0.1 53,059 - HP15_49 0.18 +2.3 53,059 - HP15_49 0.18 -0.4 53,059 - HP15_49 0.18 -0.8 53,078 + HP15_49 0.20 +1.8 53,081 - HP15_49 0.20 +1.7 53,128 + HP15_49 0.24 -0.9 53,128 + HP15_49 0.24 +0.1 53,128 + HP15_49 0.24 +2.1 53,128 + HP15_49 0.24 -1.0 53,136 - HP15_49 0.25 +0.2 53,136 - HP15_49 0.25 +2.3 53,136 - HP15_49 0.25 +2.1 53,136 - HP15_49 0.25 +0.1 53,136 - HP15_49 0.25 +5.2 53,136 - HP15_49 0.25 +0.1 53,233 - HP15_49 0.33 -0.7 53,237 + HP15_49 0.33 -0.5 53,297 - HP15_49 0.38 -1.1 53,338 - HP15_49 0.42 -0.6 53,736 - HP15_49 0.76 +2.2 53,736 - HP15_49 0.76 +0.1 53,819 - HP15_49 0.83 -1.0 53,824 - HP15_49 0.83 +1.9 53,824 - HP15_49 0.83 +0.7 53,826 + HP15_49 0.83 +0.4 53,826 + HP15_49 0.83 -0.1 53,872 + HP15_49 0.87 +2.0 53,878 + HP15_49 0.88 +1.7 53,883 + HP15_49 0.88 -0.1 53,884 + HP15_49 0.88 -1.6 53,885 - HP15_49 0.88 +2.1 53,999 + -1.1 54,036 + -0.2 54,103 + -0.8 54,103 + -0.6 54,125 - +1.9 54,158 + +0.8 54,161 - +1.5 54,207 + -0.8 54,207 + +1.4 54,215 - +0.5 54,257 - HP15_50 0.16 -0.3 54,292 - HP15_50 0.26 +2.1 54,332 + HP15_50 0.37 -0.5 54,332 + HP15_50 0.37 +2.8 54,341 - HP15_50 0.40 -0.2 54,464 + HP15_50 0.74 +1.7 54,500 - HP15_50 0.84 +1.8 54,545 + +0.0 54,553 - +0.7 54,553 - +0.1 54,558 + +0.4 54,566 - +1.1 54,580 + -0.2 54,580 + +1.9 54,635 + -0.2 54,635 + +1.6 54,643 - -0.7 54,644 - +0.3 54,649 - -0.4 54,697 - -0.4 54,697 - +0.1 54,740 - -1.5 54,741 + +2.5 54,772 + +1.3 54,811 + -0.5 54,824 - +0.5 54,834 - -0.6 54,851 + +1.9 54,857 + +0.3 54,879 + -1.5 54,879 + -0.5 54,879 + +2.3 54,884 + +1.3 54,884 + +0.1 54,887 - -0.6 54,887 - +2.1 54,892 - -0.2 54,892 - +1.7 54,892 - -1.4 54,896 + +0.5 54,899 - +0.2 54,899 - +0.2 54,904 - +0.1 54,904 - +0.1 54,904 - +0.1 54,915 - -0.5
Or see this region's nucleotide sequence