Experiment: casaminos as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2536 and HP15_2537 are separated by 150 nucleotides HP15_2537 and HP15_2538 are separated by 10 nucleotides
HP15_2536: HP15_2536 - protein containing DUF1446, at 2,679,972 to 2,681,768
_2536
HP15_2537: HP15_2537 - oxidoreductase, short-chain dehydrogenase/reductase family, at 2,681,919 to 2,682,785
_2537
HP15_2538: HP15_2538 - acetyl/propionyl-CoA carboxylase beta subunit, at 2,682,796 to 2,684,412
_2538
Position (kb)
2681
2682
2683 Strain fitness (log2 ratio)
-1
0
1
2 at 2680.932 kb on + strand, within HP15_2536 at 2680.993 kb on - strand, within HP15_2536 at 2680.993 kb on - strand, within HP15_2536 at 2681.020 kb on - strand, within HP15_2536 at 2681.094 kb on + strand, within HP15_2536 at 2681.103 kb on + strand, within HP15_2536 at 2681.103 kb on + strand, within HP15_2536 at 2681.111 kb on - strand, within HP15_2536 at 2681.152 kb on - strand, within HP15_2536 at 2681.152 kb on - strand, within HP15_2536 at 2681.216 kb on - strand, within HP15_2536 at 2681.378 kb on + strand, within HP15_2536 at 2681.391 kb on - strand, within HP15_2536 at 2681.392 kb on - strand, within HP15_2536 at 2681.404 kb on - strand, within HP15_2536 at 2681.419 kb on + strand, within HP15_2536 at 2681.449 kb on - strand, within HP15_2536 at 2681.488 kb on + strand, within HP15_2536 at 2681.580 kb on - strand, within HP15_2536 at 2681.670 kb on + strand at 2681.720 kb on - strand at 2681.765 kb on - strand at 2681.789 kb on + strand at 2681.789 kb on + strand at 2681.797 kb on - strand at 2681.797 kb on - strand at 2681.854 kb on - strand at 2681.907 kb on - strand at 2681.959 kb on - strand at 2682.045 kb on - strand, within HP15_2537 at 2682.134 kb on - strand, within HP15_2537 at 2682.138 kb on + strand, within HP15_2537 at 2682.168 kb on - strand, within HP15_2537 at 2682.189 kb on + strand, within HP15_2537 at 2682.258 kb on + strand, within HP15_2537 at 2682.258 kb on + strand, within HP15_2537 at 2682.282 kb on + strand, within HP15_2537 at 2682.306 kb on + strand, within HP15_2537 at 2682.399 kb on - strand, within HP15_2537 at 2682.423 kb on - strand, within HP15_2537 at 2682.453 kb on + strand, within HP15_2537 at 2682.631 kb on + strand, within HP15_2537 at 2682.642 kb on + strand, within HP15_2537 at 2682.699 kb on - strand at 2682.699 kb on - strand at 2682.706 kb on - strand at 2682.717 kb on + strand at 2682.732 kb on + strand at 2682.750 kb on - strand at 2682.909 kb on - strand at 2682.945 kb on + strand at 2682.954 kb on + strand at 2682.976 kb on - strand, within HP15_2538 at 2683.025 kb on + strand, within HP15_2538 at 2683.117 kb on - strand, within HP15_2538 at 2683.167 kb on + strand, within HP15_2538 at 2683.425 kb on - strand, within HP15_2538 at 2683.425 kb on - strand, within HP15_2538 at 2683.436 kb on + strand, within HP15_2538 at 2683.444 kb on - strand, within HP15_2538 at 2683.501 kb on - strand, within HP15_2538 at 2683.593 kb on - strand, within HP15_2538 at 2683.700 kb on - strand, within HP15_2538 at 2683.773 kb on + strand, within HP15_2538
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos as (N) remove 2,680,932 + HP15_2536 0.53 -1.3 2,680,993 - HP15_2536 0.57 +0.2 2,680,993 - HP15_2536 0.57 +1.7 2,681,020 - HP15_2536 0.58 -0.3 2,681,094 + HP15_2536 0.62 -0.2 2,681,103 + HP15_2536 0.63 +1.4 2,681,103 + HP15_2536 0.63 +2.0 2,681,111 - HP15_2536 0.63 -0.3 2,681,152 - HP15_2536 0.66 -0.0 2,681,152 - HP15_2536 0.66 -0.9 2,681,216 - HP15_2536 0.69 +1.9 2,681,378 + HP15_2536 0.78 +2.0 2,681,391 - HP15_2536 0.79 +2.2 2,681,392 - HP15_2536 0.79 -1.0 2,681,404 - HP15_2536 0.80 +0.0 2,681,419 + HP15_2536 0.81 -0.6 2,681,449 - HP15_2536 0.82 +0.3 2,681,488 + HP15_2536 0.84 -0.5 2,681,580 - HP15_2536 0.89 -0.0 2,681,670 + -0.1 2,681,720 - +1.9 2,681,765 - -0.8 2,681,789 + -0.2 2,681,789 + -0.5 2,681,797 - +1.8 2,681,797 - -0.7 2,681,854 - +0.7 2,681,907 - +0.2 2,681,959 - -1.2 2,682,045 - HP15_2537 0.15 +1.6 2,682,134 - HP15_2537 0.25 +1.7 2,682,138 + HP15_2537 0.25 +1.9 2,682,168 - HP15_2537 0.29 +2.0 2,682,189 + HP15_2537 0.31 -0.9 2,682,258 + HP15_2537 0.39 +1.8 2,682,258 + HP15_2537 0.39 -0.2 2,682,282 + HP15_2537 0.42 -0.5 2,682,306 + HP15_2537 0.45 -0.3 2,682,399 - HP15_2537 0.55 +1.8 2,682,423 - HP15_2537 0.58 -0.0 2,682,453 + HP15_2537 0.62 -0.2 2,682,631 + HP15_2537 0.82 +0.5 2,682,642 + HP15_2537 0.83 +1.6 2,682,699 - -0.2 2,682,699 - +0.9 2,682,706 - -0.2 2,682,717 + +1.9 2,682,732 + -0.0 2,682,750 - +1.3 2,682,909 - +1.7 2,682,945 + -0.9 2,682,954 + -0.0 2,682,976 - HP15_2538 0.11 +0.4 2,683,025 + HP15_2538 0.14 -0.2 2,683,117 - HP15_2538 0.20 +1.8 2,683,167 + HP15_2538 0.23 -1.0 2,683,425 - HP15_2538 0.39 +1.9 2,683,425 - HP15_2538 0.39 -1.2 2,683,436 + HP15_2538 0.40 +0.2 2,683,444 - HP15_2538 0.40 +1.5 2,683,501 - HP15_2538 0.44 -0.7 2,683,593 - HP15_2538 0.49 -1.3 2,683,700 - HP15_2538 0.56 +1.3 2,683,773 + HP15_2538 0.60 -0.7
Or see this region's nucleotide sequence