Strain Fitness in Marinobacter adhaerens HP15 around HP15_2537

Experiment: casaminos as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2536 and HP15_2537 are separated by 150 nucleotidesHP15_2537 and HP15_2538 are separated by 10 nucleotides HP15_2536: HP15_2536 - protein containing DUF1446, at 2,679,972 to 2,681,768 _2536 HP15_2537: HP15_2537 - oxidoreductase, short-chain dehydrogenase/reductase family, at 2,681,919 to 2,682,785 _2537 HP15_2538: HP15_2538 - acetyl/propionyl-CoA carboxylase beta subunit, at 2,682,796 to 2,684,412 _2538 Position (kb) 2681 2682 2683Strain fitness (log2 ratio) -1 0 1 2at 2680.932 kb on + strand, within HP15_2536at 2680.993 kb on - strand, within HP15_2536at 2680.993 kb on - strand, within HP15_2536at 2681.020 kb on - strand, within HP15_2536at 2681.094 kb on + strand, within HP15_2536at 2681.103 kb on + strand, within HP15_2536at 2681.103 kb on + strand, within HP15_2536at 2681.111 kb on - strand, within HP15_2536at 2681.152 kb on - strand, within HP15_2536at 2681.152 kb on - strand, within HP15_2536at 2681.216 kb on - strand, within HP15_2536at 2681.378 kb on + strand, within HP15_2536at 2681.391 kb on - strand, within HP15_2536at 2681.392 kb on - strand, within HP15_2536at 2681.404 kb on - strand, within HP15_2536at 2681.419 kb on + strand, within HP15_2536at 2681.449 kb on - strand, within HP15_2536at 2681.488 kb on + strand, within HP15_2536at 2681.580 kb on - strand, within HP15_2536at 2681.670 kb on + strandat 2681.720 kb on - strandat 2681.765 kb on - strandat 2681.789 kb on + strandat 2681.789 kb on + strandat 2681.797 kb on - strandat 2681.797 kb on - strandat 2681.854 kb on - strandat 2681.907 kb on - strandat 2681.959 kb on - strandat 2682.045 kb on - strand, within HP15_2537at 2682.134 kb on - strand, within HP15_2537at 2682.138 kb on + strand, within HP15_2537at 2682.168 kb on - strand, within HP15_2537at 2682.189 kb on + strand, within HP15_2537at 2682.258 kb on + strand, within HP15_2537at 2682.258 kb on + strand, within HP15_2537at 2682.282 kb on + strand, within HP15_2537at 2682.306 kb on + strand, within HP15_2537at 2682.399 kb on - strand, within HP15_2537at 2682.423 kb on - strand, within HP15_2537at 2682.453 kb on + strand, within HP15_2537at 2682.631 kb on + strand, within HP15_2537at 2682.642 kb on + strand, within HP15_2537at 2682.699 kb on - strandat 2682.699 kb on - strandat 2682.706 kb on - strandat 2682.717 kb on + strandat 2682.732 kb on + strandat 2682.750 kb on - strandat 2682.909 kb on - strandat 2682.945 kb on + strandat 2682.954 kb on + strandat 2682.976 kb on - strand, within HP15_2538at 2683.025 kb on + strand, within HP15_2538at 2683.117 kb on - strand, within HP15_2538at 2683.167 kb on + strand, within HP15_2538at 2683.425 kb on - strand, within HP15_2538at 2683.425 kb on - strand, within HP15_2538at 2683.436 kb on + strand, within HP15_2538at 2683.444 kb on - strand, within HP15_2538at 2683.501 kb on - strand, within HP15_2538at 2683.593 kb on - strand, within HP15_2538at 2683.700 kb on - strand, within HP15_2538at 2683.773 kb on + strand, within HP15_2538

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos as (N)
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2,680,932 + HP15_2536 0.53 -1.3
2,680,993 - HP15_2536 0.57 +0.2
2,680,993 - HP15_2536 0.57 +1.7
2,681,020 - HP15_2536 0.58 -0.3
2,681,094 + HP15_2536 0.62 -0.2
2,681,103 + HP15_2536 0.63 +1.4
2,681,103 + HP15_2536 0.63 +2.0
2,681,111 - HP15_2536 0.63 -0.3
2,681,152 - HP15_2536 0.66 -0.0
2,681,152 - HP15_2536 0.66 -0.9
2,681,216 - HP15_2536 0.69 +1.9
2,681,378 + HP15_2536 0.78 +2.0
2,681,391 - HP15_2536 0.79 +2.2
2,681,392 - HP15_2536 0.79 -1.0
2,681,404 - HP15_2536 0.80 +0.0
2,681,419 + HP15_2536 0.81 -0.6
2,681,449 - HP15_2536 0.82 +0.3
2,681,488 + HP15_2536 0.84 -0.5
2,681,580 - HP15_2536 0.89 -0.0
2,681,670 + -0.1
2,681,720 - +1.9
2,681,765 - -0.8
2,681,789 + -0.2
2,681,789 + -0.5
2,681,797 - +1.8
2,681,797 - -0.7
2,681,854 - +0.7
2,681,907 - +0.2
2,681,959 - -1.2
2,682,045 - HP15_2537 0.15 +1.6
2,682,134 - HP15_2537 0.25 +1.7
2,682,138 + HP15_2537 0.25 +1.9
2,682,168 - HP15_2537 0.29 +2.0
2,682,189 + HP15_2537 0.31 -0.9
2,682,258 + HP15_2537 0.39 +1.8
2,682,258 + HP15_2537 0.39 -0.2
2,682,282 + HP15_2537 0.42 -0.5
2,682,306 + HP15_2537 0.45 -0.3
2,682,399 - HP15_2537 0.55 +1.8
2,682,423 - HP15_2537 0.58 -0.0
2,682,453 + HP15_2537 0.62 -0.2
2,682,631 + HP15_2537 0.82 +0.5
2,682,642 + HP15_2537 0.83 +1.6
2,682,699 - -0.2
2,682,699 - +0.9
2,682,706 - -0.2
2,682,717 + +1.9
2,682,732 + -0.0
2,682,750 - +1.3
2,682,909 - +1.7
2,682,945 + -0.9
2,682,954 + -0.0
2,682,976 - HP15_2538 0.11 +0.4
2,683,025 + HP15_2538 0.14 -0.2
2,683,117 - HP15_2538 0.20 +1.8
2,683,167 + HP15_2538 0.23 -1.0
2,683,425 - HP15_2538 0.39 +1.9
2,683,425 - HP15_2538 0.39 -1.2
2,683,436 + HP15_2538 0.40 +0.2
2,683,444 - HP15_2538 0.40 +1.5
2,683,501 - HP15_2538 0.44 -0.7
2,683,593 - HP15_2538 0.49 -1.3
2,683,700 - HP15_2538 0.56 +1.3
2,683,773 + HP15_2538 0.60 -0.7

Or see this region's nucleotide sequence