Strain Fitness in Marinobacter adhaerens HP15 around HP15_171

Experiment: casaminos as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_168 and HP15_169 are separated by 87 nucleotidesHP15_169 and HP15_171 are separated by 230 nucleotidesHP15_171 and HP15_170 are separated by 45 nucleotidesHP15_170 and HP15_172 are separated by 41 nucleotidesHP15_172 and HP15_173 overlap by 17 nucleotides HP15_168: HP15_168 - conserved hypothetical protein, at 163,409 to 163,513 _168 HP15_169: HP15_169 - hypothetical protein, at 163,601 to 163,714 _169 HP15_171: HP15_171 - cytochrome c, class I-like protein, at 163,945 to 164,073 _171 HP15_170: HP15_170 - hypothetical protein, at 164,119 to 164,322 _170 HP15_172: HP15_172 - protein-S-isoprenylcysteine methyltransferase, at 164,364 to 165,032 _172 HP15_173: HP15_173 - secreted protein, at 165,016 to 165,189 _173 Position (kb) 163 164 165Strain fitness (log2 ratio) -2 -1 0 1 2 3at 162.967 kb on - strandat 162.987 kb on + strandat 163.301 kb on - strandat 163.327 kb on + strandat 163.327 kb on + strandat 163.327 kb on + strandat 163.334 kb on + strandat 163.334 kb on + strandat 163.335 kb on - strandat 163.335 kb on - strandat 163.335 kb on - strandat 163.342 kb on - strandat 163.352 kb on - strandat 163.459 kb on + strand, within HP15_168at 163.460 kb on + strand, within HP15_168at 163.471 kb on + strand, within HP15_168at 163.471 kb on + strand, within HP15_168at 163.471 kb on + strand, within HP15_168at 163.478 kb on + strand, within HP15_168at 163.478 kb on - strand, within HP15_168at 163.508 kb on + strandat 163.516 kb on - strandat 163.562 kb on + strandat 163.562 kb on + strandat 163.562 kb on + strandat 163.570 kb on - strandat 163.570 kb on - strandat 163.606 kb on + strandat 163.829 kb on - strandat 163.897 kb on - strandat 163.967 kb on - strand, within HP15_171at 164.008 kb on + strand, within HP15_171at 164.030 kb on + strand, within HP15_171at 164.038 kb on - strand, within HP15_171at 164.038 kb on - strand, within HP15_171at 164.038 kb on - strand, within HP15_171at 164.128 kb on + strandat 164.141 kb on - strand, within HP15_170at 164.242 kb on + strand, within HP15_170at 164.255 kb on - strand, within HP15_170at 164.258 kb on + strand, within HP15_170at 164.264 kb on + strand, within HP15_170at 164.264 kb on + strand, within HP15_170at 164.266 kb on + strand, within HP15_170at 164.269 kb on + strand, within HP15_170at 164.272 kb on - strand, within HP15_170at 164.272 kb on - strand, within HP15_170at 164.274 kb on + strand, within HP15_170at 164.276 kb on + strand, within HP15_170at 164.282 kb on - strand, within HP15_170at 164.291 kb on + strand, within HP15_170at 164.295 kb on - strand, within HP15_170at 164.432 kb on - strand, within HP15_172at 164.514 kb on - strand, within HP15_172at 164.543 kb on + strand, within HP15_172at 164.543 kb on + strand, within HP15_172at 164.543 kb on + strand, within HP15_172at 164.543 kb on + strand, within HP15_172at 164.543 kb on + strand, within HP15_172at 164.551 kb on - strand, within HP15_172at 164.551 kb on - strand, within HP15_172at 164.561 kb on - strand, within HP15_172at 164.656 kb on + strand, within HP15_172at 164.664 kb on - strand, within HP15_172at 164.675 kb on - strand, within HP15_172at 164.703 kb on + strand, within HP15_172at 164.759 kb on - strand, within HP15_172at 164.787 kb on + strand, within HP15_172at 164.787 kb on + strand, within HP15_172at 164.820 kb on + strand, within HP15_172at 164.939 kb on - strand, within HP15_172at 165.036 kb on + strand, within HP15_173at 165.044 kb on - strand, within HP15_173at 165.044 kb on - strand, within HP15_173at 165.057 kb on + strand, within HP15_173

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos as (N)
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162,967 - -0.9
162,987 + -0.9
163,301 - +2.1
163,327 + -0.3
163,327 + -0.1
163,327 + +1.5
163,334 + +0.0
163,334 + -2.4
163,335 - -0.2
163,335 - -2.2
163,335 - +0.8
163,342 - +2.3
163,352 - -0.1
163,459 + HP15_168 0.48 +1.6
163,460 + HP15_168 0.49 -0.7
163,471 + HP15_168 0.59 +0.4
163,471 + HP15_168 0.59 -0.2
163,471 + HP15_168 0.59 -1.0
163,478 + HP15_168 0.66 -0.4
163,478 - HP15_168 0.66 -0.7
163,508 + +3.0
163,516 - +0.0
163,562 + -0.5
163,562 + +2.4
163,562 + +0.1
163,570 - +1.0
163,570 - -0.9
163,606 + +2.0
163,829 - +0.7
163,897 - -0.8
163,967 - HP15_171 0.17 -1.5
164,008 + HP15_171 0.49 -0.6
164,030 + HP15_171 0.66 +0.3
164,038 - HP15_171 0.72 +0.2
164,038 - HP15_171 0.72 +2.0
164,038 - HP15_171 0.72 -0.9
164,128 + +2.7
164,141 - HP15_170 0.11 -0.3
164,242 + HP15_170 0.60 -0.5
164,255 - HP15_170 0.67 -0.2
164,258 + HP15_170 0.68 -0.7
164,264 + HP15_170 0.71 -0.2
164,264 + HP15_170 0.71 -0.1
164,266 + HP15_170 0.72 +2.0
164,269 + HP15_170 0.74 +2.7
164,272 - HP15_170 0.75 +1.5
164,272 - HP15_170 0.75 +1.8
164,274 + HP15_170 0.76 +1.0
164,276 + HP15_170 0.77 -0.5
164,282 - HP15_170 0.80 -0.3
164,291 + HP15_170 0.84 -1.3
164,295 - HP15_170 0.86 -1.3
164,432 - HP15_172 0.10 +1.4
164,514 - HP15_172 0.22 +0.0
164,543 + HP15_172 0.27 -0.4
164,543 + HP15_172 0.27 -0.3
164,543 + HP15_172 0.27 -0.2
164,543 + HP15_172 0.27 -0.6
164,543 + HP15_172 0.27 -0.7
164,551 - HP15_172 0.28 -0.1
164,551 - HP15_172 0.28 -0.1
164,561 - HP15_172 0.29 -0.7
164,656 + HP15_172 0.44 +1.4
164,664 - HP15_172 0.45 +0.0
164,675 - HP15_172 0.46 +1.9
164,703 + HP15_172 0.51 +0.4
164,759 - HP15_172 0.59 +0.1
164,787 + HP15_172 0.63 -1.4
164,787 + HP15_172 0.63 +1.8
164,820 + HP15_172 0.68 -0.5
164,939 - HP15_172 0.86 -0.5
165,036 + HP15_173 0.11 +1.3
165,044 - HP15_173 0.16 -0.1
165,044 - HP15_173 0.16 +0.7
165,057 + HP15_173 0.24 +1.5

Or see this region's nucleotide sequence