Strain Fitness in Marinobacter adhaerens HP15 around HP15_1487

Experiment: casaminos as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1484 and HP15_1485 overlap by 8 nucleotidesHP15_1485 and HP15_1486 are separated by 21 nucleotidesHP15_1486 and HP15_1487 overlap by 21 nucleotidesHP15_1487 and HP15_1488 are separated by 22 nucleotides HP15_1484: HP15_1484 - RNA methyltransferase, TrmH family, group 1, at 1,560,703 to 1,561,566 _1484 HP15_1485: HP15_1485 - serine O-acetyltransferase, at 1,561,559 to 1,562,332 _1485 HP15_1486: HP15_1486 - hypothetical protein, at 1,562,354 to 1,562,470 _1486 HP15_1487: HP15_1487 - transcriptional regulator, BadM/Rrf2 family, at 1,562,450 to 1,562,908 _1487 HP15_1488: HP15_1488 - cysteine desulfurase IscS, at 1,562,931 to 1,564,079 _1488 Position (kb) 1562 1563Strain fitness (log2 ratio) -1 0 1at 1561.470 kb on + strand, within HP15_1484at 1561.543 kb on + strandat 1561.548 kb on + strandat 1562.313 kb on + strandat 1562.727 kb on + strand, within HP15_1487at 1562.734 kb on + strand, within HP15_1487at 1562.739 kb on + strand, within HP15_1487

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos as (N)
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1,561,470 + HP15_1484 0.89 -0.6
1,561,543 + -1.1
1,561,548 + -0.5
1,562,313 + -0.3
1,562,727 + HP15_1487 0.60 -0.4
1,562,734 + HP15_1487 0.62 -0.3
1,562,739 + HP15_1487 0.63 -1.1

Or see this region's nucleotide sequence