Experiment: casaminos as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1386 and HP15_1387 are separated by 12 nucleotides HP15_1387 and HP15_1388 are separated by 168 nucleotides
HP15_1386: HP15_1386 - ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component, at 1,460,711 to 1,463,197
_1386
HP15_1387: HP15_1387 - ABC-type amino acid transport/signal transduction system, periplasmic domain protein, at 1,463,210 to 1,463,992
_1387
HP15_1388: HP15_1388 - iron-containing alcohol dehydrogenase, at 1,464,161 to 1,465,348
_1388
Position (kb)
1463
1464 Strain fitness (log2 ratio)
-1
0
1
2 at 1462.446 kb on + strand, within HP15_1386 at 1462.458 kb on - strand, within HP15_1386 at 1462.526 kb on - strand, within HP15_1386 at 1462.562 kb on - strand, within HP15_1386 at 1462.656 kb on + strand, within HP15_1386 at 1462.697 kb on - strand, within HP15_1386 at 1463.072 kb on - strand at 1463.250 kb on + strand at 1463.319 kb on - strand, within HP15_1387 at 1463.443 kb on + strand, within HP15_1387 at 1463.451 kb on - strand, within HP15_1387 at 1463.476 kb on + strand, within HP15_1387 at 1463.675 kb on + strand, within HP15_1387 at 1463.683 kb on - strand, within HP15_1387 at 1463.692 kb on - strand, within HP15_1387 at 1463.751 kb on + strand, within HP15_1387 at 1463.827 kb on - strand, within HP15_1387 at 1463.887 kb on + strand, within HP15_1387 at 1463.887 kb on + strand, within HP15_1387 at 1463.887 kb on + strand, within HP15_1387 at 1464.002 kb on - strand at 1464.176 kb on + strand at 1464.176 kb on + strand at 1464.184 kb on - strand at 1464.184 kb on - strand at 1464.184 kb on - strand at 1464.234 kb on - strand at 1464.403 kb on + strand, within HP15_1388 at 1464.485 kb on + strand, within HP15_1388 at 1464.599 kb on + strand, within HP15_1388 at 1464.639 kb on - strand, within HP15_1388 at 1464.731 kb on + strand, within HP15_1388 at 1464.763 kb on - strand, within HP15_1388 at 1464.799 kb on - strand, within HP15_1388 at 1464.901 kb on + strand, within HP15_1388 at 1464.909 kb on - strand, within HP15_1388 at 1464.962 kb on - strand, within HP15_1388 at 1464.972 kb on - strand, within HP15_1388
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos as (N) remove 1,462,446 + HP15_1386 0.70 -0.3 1,462,458 - HP15_1386 0.70 +2.0 1,462,526 - HP15_1386 0.73 -0.6 1,462,562 - HP15_1386 0.74 -0.7 1,462,656 + HP15_1386 0.78 +2.2 1,462,697 - HP15_1386 0.80 +0.9 1,463,072 - +0.7 1,463,250 + +0.6 1,463,319 - HP15_1387 0.14 +2.3 1,463,443 + HP15_1387 0.30 +0.1 1,463,451 - HP15_1387 0.31 -0.6 1,463,476 + HP15_1387 0.34 +1.3 1,463,675 + HP15_1387 0.59 +0.2 1,463,683 - HP15_1387 0.60 +0.2 1,463,692 - HP15_1387 0.62 +0.2 1,463,751 + HP15_1387 0.69 -0.1 1,463,827 - HP15_1387 0.79 -0.3 1,463,887 + HP15_1387 0.86 -0.6 1,463,887 + HP15_1387 0.86 +0.3 1,463,887 + HP15_1387 0.86 -0.9 1,464,002 - +1.8 1,464,176 + -0.4 1,464,176 + +1.3 1,464,184 - +2.0 1,464,184 - +1.1 1,464,184 - -1.1 1,464,234 - +1.9 1,464,403 + HP15_1388 0.20 -0.3 1,464,485 + HP15_1388 0.27 +0.3 1,464,599 + HP15_1388 0.37 +1.4 1,464,639 - HP15_1388 0.40 +0.6 1,464,731 + HP15_1388 0.48 +2.0 1,464,763 - HP15_1388 0.51 -0.4 1,464,799 - HP15_1388 0.54 -0.1 1,464,901 + HP15_1388 0.62 +2.4 1,464,909 - HP15_1388 0.63 -0.5 1,464,962 - HP15_1388 0.67 +0.6 1,464,972 - HP15_1388 0.68 +2.3
Or see this region's nucleotide sequence