Strain Fitness in Marinobacter adhaerens HP15 around HP15_1387

Experiment: casaminos as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1386 and HP15_1387 are separated by 12 nucleotidesHP15_1387 and HP15_1388 are separated by 168 nucleotides HP15_1386: HP15_1386 - ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component, at 1,460,711 to 1,463,197 _1386 HP15_1387: HP15_1387 - ABC-type amino acid transport/signal transduction system, periplasmic domain protein, at 1,463,210 to 1,463,992 _1387 HP15_1388: HP15_1388 - iron-containing alcohol dehydrogenase, at 1,464,161 to 1,465,348 _1388 Position (kb) 1463 1464Strain fitness (log2 ratio) -1 0 1 2at 1462.446 kb on + strand, within HP15_1386at 1462.458 kb on - strand, within HP15_1386at 1462.526 kb on - strand, within HP15_1386at 1462.562 kb on - strand, within HP15_1386at 1462.656 kb on + strand, within HP15_1386at 1462.697 kb on - strand, within HP15_1386at 1463.072 kb on - strandat 1463.250 kb on + strandat 1463.319 kb on - strand, within HP15_1387at 1463.443 kb on + strand, within HP15_1387at 1463.451 kb on - strand, within HP15_1387at 1463.476 kb on + strand, within HP15_1387at 1463.675 kb on + strand, within HP15_1387at 1463.683 kb on - strand, within HP15_1387at 1463.692 kb on - strand, within HP15_1387at 1463.751 kb on + strand, within HP15_1387at 1463.827 kb on - strand, within HP15_1387at 1463.887 kb on + strand, within HP15_1387at 1463.887 kb on + strand, within HP15_1387at 1463.887 kb on + strand, within HP15_1387at 1464.002 kb on - strandat 1464.176 kb on + strandat 1464.176 kb on + strandat 1464.184 kb on - strandat 1464.184 kb on - strandat 1464.184 kb on - strandat 1464.234 kb on - strandat 1464.403 kb on + strand, within HP15_1388at 1464.485 kb on + strand, within HP15_1388at 1464.599 kb on + strand, within HP15_1388at 1464.639 kb on - strand, within HP15_1388at 1464.731 kb on + strand, within HP15_1388at 1464.763 kb on - strand, within HP15_1388at 1464.799 kb on - strand, within HP15_1388at 1464.901 kb on + strand, within HP15_1388at 1464.909 kb on - strand, within HP15_1388at 1464.962 kb on - strand, within HP15_1388at 1464.972 kb on - strand, within HP15_1388

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos as (N)
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1,462,446 + HP15_1386 0.70 -0.3
1,462,458 - HP15_1386 0.70 +2.0
1,462,526 - HP15_1386 0.73 -0.6
1,462,562 - HP15_1386 0.74 -0.7
1,462,656 + HP15_1386 0.78 +2.2
1,462,697 - HP15_1386 0.80 +0.9
1,463,072 - +0.7
1,463,250 + +0.6
1,463,319 - HP15_1387 0.14 +2.3
1,463,443 + HP15_1387 0.30 +0.1
1,463,451 - HP15_1387 0.31 -0.6
1,463,476 + HP15_1387 0.34 +1.3
1,463,675 + HP15_1387 0.59 +0.2
1,463,683 - HP15_1387 0.60 +0.2
1,463,692 - HP15_1387 0.62 +0.2
1,463,751 + HP15_1387 0.69 -0.1
1,463,827 - HP15_1387 0.79 -0.3
1,463,887 + HP15_1387 0.86 -0.6
1,463,887 + HP15_1387 0.86 +0.3
1,463,887 + HP15_1387 0.86 -0.9
1,464,002 - +1.8
1,464,176 + -0.4
1,464,176 + +1.3
1,464,184 - +2.0
1,464,184 - +1.1
1,464,184 - -1.1
1,464,234 - +1.9
1,464,403 + HP15_1388 0.20 -0.3
1,464,485 + HP15_1388 0.27 +0.3
1,464,599 + HP15_1388 0.37 +1.4
1,464,639 - HP15_1388 0.40 +0.6
1,464,731 + HP15_1388 0.48 +2.0
1,464,763 - HP15_1388 0.51 -0.4
1,464,799 - HP15_1388 0.54 -0.1
1,464,901 + HP15_1388 0.62 +2.4
1,464,909 - HP15_1388 0.63 -0.5
1,464,962 - HP15_1388 0.67 +0.6
1,464,972 - HP15_1388 0.68 +2.3

Or see this region's nucleotide sequence