Strain Fitness in Marinobacter adhaerens HP15 around HP15_1141

Experiment: casaminos as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1140 and HP15_1141 are separated by 306 nucleotidesHP15_1141 and HP15_1142 are separated by 51 nucleotidesHP15_1142 and HP15_1143 are separated by 24 nucleotides HP15_1140: HP15_1140 - MECDP-synthase, at 1,171,859 to 1,174,723 _1140 HP15_1141: HP15_1141 - enoyl-CoA hydratase/isomerase, at 1,175,030 to 1,175,803 _1141 HP15_1142: HP15_1142 - hypothetical protein, at 1,175,855 to 1,175,962 _1142 HP15_1143: HP15_1143 - hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit, at 1,175,987 to 1,177,501 _1143 Position (kb) 1175 1176Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1174.039 kb on - strand, within HP15_1140at 1174.041 kb on + strand, within HP15_1140at 1174.046 kb on + strand, within HP15_1140at 1174.073 kb on + strand, within HP15_1140at 1174.211 kb on + strand, within HP15_1140at 1174.263 kb on - strand, within HP15_1140at 1174.307 kb on + strand, within HP15_1140at 1174.331 kb on + strand, within HP15_1140at 1174.384 kb on - strand, within HP15_1140at 1174.464 kb on - strandat 1174.484 kb on + strandat 1174.501 kb on + strandat 1174.667 kb on + strandat 1174.839 kb on + strandat 1174.910 kb on + strandat 1175.120 kb on + strand, within HP15_1141at 1175.248 kb on - strand, within HP15_1141at 1175.265 kb on - strand, within HP15_1141at 1175.287 kb on - strand, within HP15_1141at 1175.304 kb on - strand, within HP15_1141at 1175.319 kb on + strand, within HP15_1141at 1175.333 kb on - strand, within HP15_1141at 1175.555 kb on + strand, within HP15_1141at 1175.622 kb on + strand, within HP15_1141at 1175.663 kb on - strand, within HP15_1141at 1175.711 kb on - strand, within HP15_1141at 1175.788 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos as (N)
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1,174,039 - HP15_1140 0.76 -0.6
1,174,041 + HP15_1140 0.76 +2.3
1,174,046 + HP15_1140 0.76 -0.1
1,174,073 + HP15_1140 0.77 -1.0
1,174,211 + HP15_1140 0.82 +1.5
1,174,263 - HP15_1140 0.84 -0.0
1,174,307 + HP15_1140 0.85 -0.8
1,174,331 + HP15_1140 0.86 -1.0
1,174,384 - HP15_1140 0.88 -0.7
1,174,464 - +0.3
1,174,484 + +0.3
1,174,501 + -0.7
1,174,667 + -0.0
1,174,839 + -0.7
1,174,910 + +0.1
1,175,120 + HP15_1141 0.12 +0.1
1,175,248 - HP15_1141 0.28 +0.3
1,175,265 - HP15_1141 0.30 +0.2
1,175,287 - HP15_1141 0.33 +1.8
1,175,304 - HP15_1141 0.35 -2.8
1,175,319 + HP15_1141 0.37 +0.4
1,175,333 - HP15_1141 0.39 +1.6
1,175,555 + HP15_1141 0.68 +1.5
1,175,622 + HP15_1141 0.76 +1.8
1,175,663 - HP15_1141 0.82 -0.2
1,175,711 - HP15_1141 0.88 +1.7
1,175,788 + +1.4

Or see this region's nucleotide sequence