Strain Fitness in Marinobacter adhaerens HP15 around HP15_1107

Experiment: casaminos as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1106 and HP15_1107 are separated by 594 nucleotidesHP15_1107 and HP15_1108 are separated by 10 nucleotides HP15_1106: HP15_1106 - Rieske (2Fe-2S) domain protein, at 1,132,749 to 1,133,993 _1106 HP15_1107: HP15_1107 - oxidoreductase FAD/NAD(P)-binding domain protein, at 1,134,588 to 1,135,604 _1107 HP15_1108: HP15_1108 - 3-ketoacyl-(acyl-carrier-protein) reductase, at 1,135,615 to 1,136,400 _1108 Position (kb) 1134 1135 1136Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1133.731 kb on - strand, within HP15_1106at 1133.782 kb on + strand, within HP15_1106at 1133.827 kb on + strand, within HP15_1106at 1133.830 kb on - strand, within HP15_1106at 1133.907 kb on - strandat 1134.127 kb on - strandat 1134.201 kb on + strandat 1134.270 kb on + strandat 1134.520 kb on - strandat 1134.525 kb on - strandat 1134.525 kb on - strandat 1134.527 kb on + strandat 1134.543 kb on + strandat 1134.754 kb on + strand, within HP15_1107at 1134.789 kb on + strand, within HP15_1107at 1134.797 kb on + strand, within HP15_1107at 1134.797 kb on + strand, within HP15_1107at 1134.805 kb on - strand, within HP15_1107at 1134.805 kb on - strand, within HP15_1107at 1134.871 kb on - strand, within HP15_1107at 1134.935 kb on + strand, within HP15_1107at 1134.945 kb on + strand, within HP15_1107at 1134.945 kb on + strand, within HP15_1107at 1134.953 kb on - strand, within HP15_1107at 1135.020 kb on - strand, within HP15_1107at 1135.030 kb on - strand, within HP15_1107at 1135.040 kb on - strand, within HP15_1107at 1135.040 kb on - strand, within HP15_1107at 1135.057 kb on - strand, within HP15_1107at 1135.065 kb on - strand, within HP15_1107at 1135.089 kb on - strand, within HP15_1107at 1135.089 kb on - strand, within HP15_1107at 1135.089 kb on - strand, within HP15_1107at 1135.116 kb on + strand, within HP15_1107at 1135.140 kb on + strand, within HP15_1107at 1135.148 kb on - strand, within HP15_1107at 1135.148 kb on - strand, within HP15_1107at 1135.162 kb on + strand, within HP15_1107at 1135.189 kb on + strand, within HP15_1107at 1135.197 kb on - strand, within HP15_1107at 1135.212 kb on - strand, within HP15_1107at 1135.253 kb on + strand, within HP15_1107at 1135.345 kb on + strand, within HP15_1107at 1135.355 kb on + strand, within HP15_1107at 1135.363 kb on - strand, within HP15_1107at 1135.363 kb on - strand, within HP15_1107at 1135.416 kb on + strand, within HP15_1107at 1135.537 kb on + strandat 1135.609 kb on + strandat 1135.651 kb on - strandat 1135.663 kb on + strandat 1135.668 kb on + strandat 1135.733 kb on + strand, within HP15_1108at 1135.789 kb on + strand, within HP15_1108at 1135.789 kb on + strand, within HP15_1108at 1135.816 kb on - strand, within HP15_1108at 1135.818 kb on + strand, within HP15_1108at 1135.915 kb on - strand, within HP15_1108at 1135.915 kb on - strand, within HP15_1108at 1135.917 kb on - strand, within HP15_1108at 1135.988 kb on - strand, within HP15_1108at 1136.017 kb on + strand, within HP15_1108at 1136.072 kb on - strand, within HP15_1108at 1136.106 kb on + strand, within HP15_1108at 1136.255 kb on + strand, within HP15_1108at 1136.275 kb on - strand, within HP15_1108at 1136.280 kb on - strand, within HP15_1108at 1136.313 kb on + strand, within HP15_1108at 1136.336 kb on + strandat 1136.336 kb on + strandat 1136.532 kb on + strandat 1136.540 kb on - strandat 1136.540 kb on - strandat 1136.540 kb on - strandat 1136.566 kb on - strandat 1136.585 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos as (N)
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1,133,731 - HP15_1106 0.79 +1.6
1,133,782 + HP15_1106 0.83 -0.1
1,133,827 + HP15_1106 0.87 -0.0
1,133,830 - HP15_1106 0.87 -1.1
1,133,907 - -2.3
1,134,127 - +1.4
1,134,201 + +3.3
1,134,270 + +1.7
1,134,520 - +0.1
1,134,525 - +2.1
1,134,525 - -0.3
1,134,527 + -0.9
1,134,543 + -0.5
1,134,754 + HP15_1107 0.16 +2.0
1,134,789 + HP15_1107 0.20 -1.2
1,134,797 + HP15_1107 0.21 -0.4
1,134,797 + HP15_1107 0.21 +1.9
1,134,805 - HP15_1107 0.21 +0.8
1,134,805 - HP15_1107 0.21 -0.6
1,134,871 - HP15_1107 0.28 -0.1
1,134,935 + HP15_1107 0.34 -0.4
1,134,945 + HP15_1107 0.35 -0.5
1,134,945 + HP15_1107 0.35 +2.7
1,134,953 - HP15_1107 0.36 -1.4
1,135,020 - HP15_1107 0.42 -0.1
1,135,030 - HP15_1107 0.43 -0.3
1,135,040 - HP15_1107 0.44 -0.4
1,135,040 - HP15_1107 0.44 -0.4
1,135,057 - HP15_1107 0.46 +2.3
1,135,065 - HP15_1107 0.47 +0.1
1,135,089 - HP15_1107 0.49 +2.0
1,135,089 - HP15_1107 0.49 +2.0
1,135,089 - HP15_1107 0.49 -0.4
1,135,116 + HP15_1107 0.52 -1.8
1,135,140 + HP15_1107 0.54 +0.7
1,135,148 - HP15_1107 0.55 -0.4
1,135,148 - HP15_1107 0.55 -2.2
1,135,162 + HP15_1107 0.56 -0.5
1,135,189 + HP15_1107 0.59 +0.1
1,135,197 - HP15_1107 0.60 +1.6
1,135,212 - HP15_1107 0.61 -0.2
1,135,253 + HP15_1107 0.65 -0.0
1,135,345 + HP15_1107 0.74 -0.9
1,135,355 + HP15_1107 0.75 -0.4
1,135,363 - HP15_1107 0.76 -1.0
1,135,363 - HP15_1107 0.76 +2.1
1,135,416 + HP15_1107 0.81 -0.3
1,135,537 + +2.6
1,135,609 + -0.4
1,135,651 - +2.6
1,135,663 + -0.1
1,135,668 + +0.2
1,135,733 + HP15_1108 0.15 +1.5
1,135,789 + HP15_1108 0.22 -0.3
1,135,789 + HP15_1108 0.22 +0.3
1,135,816 - HP15_1108 0.26 -0.4
1,135,818 + HP15_1108 0.26 -0.6
1,135,915 - HP15_1108 0.38 -1.4
1,135,915 - HP15_1108 0.38 +0.0
1,135,917 - HP15_1108 0.38 +2.0
1,135,988 - HP15_1108 0.47 +0.7
1,136,017 + HP15_1108 0.51 -0.3
1,136,072 - HP15_1108 0.58 -0.1
1,136,106 + HP15_1108 0.62 -0.3
1,136,255 + HP15_1108 0.81 -0.4
1,136,275 - HP15_1108 0.84 -1.8
1,136,280 - HP15_1108 0.85 +0.1
1,136,313 + HP15_1108 0.89 +1.7
1,136,336 + -0.9
1,136,336 + +1.8
1,136,532 + -0.5
1,136,540 - +1.8
1,136,540 - -0.4
1,136,540 - -0.1
1,136,566 - -1.7
1,136,585 - -0.4

Or see this region's nucleotide sequence