Experiment: casaminos as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1106 and HP15_1107 are separated by 594 nucleotides HP15_1107 and HP15_1108 are separated by 10 nucleotides
HP15_1106: HP15_1106 - Rieske (2Fe-2S) domain protein, at 1,132,749 to 1,133,993
_1106
HP15_1107: HP15_1107 - oxidoreductase FAD/NAD(P)-binding domain protein, at 1,134,588 to 1,135,604
_1107
HP15_1108: HP15_1108 - 3-ketoacyl-(acyl-carrier-protein) reductase, at 1,135,615 to 1,136,400
_1108
Position (kb)
1134
1135
1136 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1133.731 kb on - strand, within HP15_1106 at 1133.782 kb on + strand, within HP15_1106 at 1133.827 kb on + strand, within HP15_1106 at 1133.830 kb on - strand, within HP15_1106 at 1133.907 kb on - strand at 1134.127 kb on - strand at 1134.201 kb on + strand at 1134.270 kb on + strand at 1134.520 kb on - strand at 1134.525 kb on - strand at 1134.525 kb on - strand at 1134.527 kb on + strand at 1134.543 kb on + strand at 1134.754 kb on + strand, within HP15_1107 at 1134.789 kb on + strand, within HP15_1107 at 1134.797 kb on + strand, within HP15_1107 at 1134.797 kb on + strand, within HP15_1107 at 1134.805 kb on - strand, within HP15_1107 at 1134.805 kb on - strand, within HP15_1107 at 1134.871 kb on - strand, within HP15_1107 at 1134.935 kb on + strand, within HP15_1107 at 1134.945 kb on + strand, within HP15_1107 at 1134.945 kb on + strand, within HP15_1107 at 1134.953 kb on - strand, within HP15_1107 at 1135.020 kb on - strand, within HP15_1107 at 1135.030 kb on - strand, within HP15_1107 at 1135.040 kb on - strand, within HP15_1107 at 1135.040 kb on - strand, within HP15_1107 at 1135.057 kb on - strand, within HP15_1107 at 1135.065 kb on - strand, within HP15_1107 at 1135.089 kb on - strand, within HP15_1107 at 1135.089 kb on - strand, within HP15_1107 at 1135.089 kb on - strand, within HP15_1107 at 1135.116 kb on + strand, within HP15_1107 at 1135.140 kb on + strand, within HP15_1107 at 1135.148 kb on - strand, within HP15_1107 at 1135.148 kb on - strand, within HP15_1107 at 1135.162 kb on + strand, within HP15_1107 at 1135.189 kb on + strand, within HP15_1107 at 1135.197 kb on - strand, within HP15_1107 at 1135.212 kb on - strand, within HP15_1107 at 1135.253 kb on + strand, within HP15_1107 at 1135.345 kb on + strand, within HP15_1107 at 1135.355 kb on + strand, within HP15_1107 at 1135.363 kb on - strand, within HP15_1107 at 1135.363 kb on - strand, within HP15_1107 at 1135.416 kb on + strand, within HP15_1107 at 1135.537 kb on + strand at 1135.609 kb on + strand at 1135.651 kb on - strand at 1135.663 kb on + strand at 1135.668 kb on + strand at 1135.733 kb on + strand, within HP15_1108 at 1135.789 kb on + strand, within HP15_1108 at 1135.789 kb on + strand, within HP15_1108 at 1135.816 kb on - strand, within HP15_1108 at 1135.818 kb on + strand, within HP15_1108 at 1135.915 kb on - strand, within HP15_1108 at 1135.915 kb on - strand, within HP15_1108 at 1135.917 kb on - strand, within HP15_1108 at 1135.988 kb on - strand, within HP15_1108 at 1136.017 kb on + strand, within HP15_1108 at 1136.072 kb on - strand, within HP15_1108 at 1136.106 kb on + strand, within HP15_1108 at 1136.255 kb on + strand, within HP15_1108 at 1136.275 kb on - strand, within HP15_1108 at 1136.280 kb on - strand, within HP15_1108 at 1136.313 kb on + strand, within HP15_1108 at 1136.336 kb on + strand at 1136.336 kb on + strand at 1136.532 kb on + strand at 1136.540 kb on - strand at 1136.540 kb on - strand at 1136.540 kb on - strand at 1136.566 kb on - strand at 1136.585 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos as (N) remove 1,133,731 - HP15_1106 0.79 +1.6 1,133,782 + HP15_1106 0.83 -0.1 1,133,827 + HP15_1106 0.87 -0.0 1,133,830 - HP15_1106 0.87 -1.1 1,133,907 - -2.3 1,134,127 - +1.4 1,134,201 + +3.3 1,134,270 + +1.7 1,134,520 - +0.1 1,134,525 - +2.1 1,134,525 - -0.3 1,134,527 + -0.9 1,134,543 + -0.5 1,134,754 + HP15_1107 0.16 +2.0 1,134,789 + HP15_1107 0.20 -1.2 1,134,797 + HP15_1107 0.21 -0.4 1,134,797 + HP15_1107 0.21 +1.9 1,134,805 - HP15_1107 0.21 +0.8 1,134,805 - HP15_1107 0.21 -0.6 1,134,871 - HP15_1107 0.28 -0.1 1,134,935 + HP15_1107 0.34 -0.4 1,134,945 + HP15_1107 0.35 -0.5 1,134,945 + HP15_1107 0.35 +2.7 1,134,953 - HP15_1107 0.36 -1.4 1,135,020 - HP15_1107 0.42 -0.1 1,135,030 - HP15_1107 0.43 -0.3 1,135,040 - HP15_1107 0.44 -0.4 1,135,040 - HP15_1107 0.44 -0.4 1,135,057 - HP15_1107 0.46 +2.3 1,135,065 - HP15_1107 0.47 +0.1 1,135,089 - HP15_1107 0.49 +2.0 1,135,089 - HP15_1107 0.49 +2.0 1,135,089 - HP15_1107 0.49 -0.4 1,135,116 + HP15_1107 0.52 -1.8 1,135,140 + HP15_1107 0.54 +0.7 1,135,148 - HP15_1107 0.55 -0.4 1,135,148 - HP15_1107 0.55 -2.2 1,135,162 + HP15_1107 0.56 -0.5 1,135,189 + HP15_1107 0.59 +0.1 1,135,197 - HP15_1107 0.60 +1.6 1,135,212 - HP15_1107 0.61 -0.2 1,135,253 + HP15_1107 0.65 -0.0 1,135,345 + HP15_1107 0.74 -0.9 1,135,355 + HP15_1107 0.75 -0.4 1,135,363 - HP15_1107 0.76 -1.0 1,135,363 - HP15_1107 0.76 +2.1 1,135,416 + HP15_1107 0.81 -0.3 1,135,537 + +2.6 1,135,609 + -0.4 1,135,651 - +2.6 1,135,663 + -0.1 1,135,668 + +0.2 1,135,733 + HP15_1108 0.15 +1.5 1,135,789 + HP15_1108 0.22 -0.3 1,135,789 + HP15_1108 0.22 +0.3 1,135,816 - HP15_1108 0.26 -0.4 1,135,818 + HP15_1108 0.26 -0.6 1,135,915 - HP15_1108 0.38 -1.4 1,135,915 - HP15_1108 0.38 +0.0 1,135,917 - HP15_1108 0.38 +2.0 1,135,988 - HP15_1108 0.47 +0.7 1,136,017 + HP15_1108 0.51 -0.3 1,136,072 - HP15_1108 0.58 -0.1 1,136,106 + HP15_1108 0.62 -0.3 1,136,255 + HP15_1108 0.81 -0.4 1,136,275 - HP15_1108 0.84 -1.8 1,136,280 - HP15_1108 0.85 +0.1 1,136,313 + HP15_1108 0.89 +1.7 1,136,336 + -0.9 1,136,336 + +1.8 1,136,532 + -0.5 1,136,540 - +1.8 1,136,540 - -0.4 1,136,540 - -0.1 1,136,566 - -1.7 1,136,585 - -0.4
Or see this region's nucleotide sequence