Strain Fitness in Shewanella amazonensis SB2B around Sama_3455

Experiment: L-Serine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Serine
4,083,758	+		Sama_3453	0.18	+0.4
4,083,758	+		Sama_3453	0.18	-1.6
4,083,758	+		Sama_3453	0.18	-0.6
4,083,759	-		Sama_3453	0.18	-1.6
4,083,759	-		Sama_3453	0.18	-0.1
4,083,770	+		Sama_3453	0.20	-0.4
4,083,771	-		Sama_3453	0.20	+0.6
4,083,800	+		Sama_3453	0.26	+0.6
4,083,801	-		Sama_3453	0.26	-1.9
4,083,823	+		Sama_3453	0.30	-0.6
4,083,823	+		Sama_3453	0.30	-0.1
4,083,823	+		Sama_3453	0.30	-0.8
4,083,823	+		Sama_3453	0.30	+0.8
4,083,850	+		Sama_3453	0.35	-0.3
4,083,890	+		Sama_3453	0.42	-0.1
4,083,890	+		Sama_3453	0.42	+0.1
4,083,890	+		Sama_3453	0.42	-0.9
4,084,001	+		Sama_3453	0.63	-0.9
4,084,001	+		Sama_3453	0.63	+0.2
4,084,001	+		Sama_3453	0.63	-0.8
4,084,001	+		Sama_3453	0.63	+0.9
4,084,001	+		Sama_3453	0.63	+0.3
4,084,002	-		Sama_3453	0.63	-0.4
4,084,002	-		Sama_3453	0.63	-0.5
4,084,002	-		Sama_3453	0.63	+0.1
4,084,065	+		Sama_3453	0.75	+0.0
4,084,066	-		Sama_3453	0.75	-0.5
4,084,066	-		Sama_3453	0.75	-0.3
4,084,066	-		Sama_3453	0.75	-0.4
4,084,088	+		Sama_3453	0.79	-1.9
4,084,088	+		Sama_3453	0.79	+0.3
4,084,088	+		Sama_3453	0.79	+1.1
4,084,135	-		Sama_3453	0.87	-0.3
4,084,135	-		Sama_3453	0.87	-0.2
4,084,160	+				+1.5
4,084,160	+				-0.4
4,084,160	+				+0.9
4,084,160	+				-1.1
4,084,161	-				-0.4
4,084,171	+				-0.2
4,084,172	-				-1.4
4,084,200	+				-0.3
4,084,200	+				-1.3
4,084,200	+				+0.1
4,084,201	-				-0.9
4,084,201	-				+1.1
4,084,201	-				-0.4
4,084,208	-				+0.6
4,084,208	-				-0.8
4,084,208	-				+0.3
4,084,208	-				+1.2
4,084,233	+				-0.9
4,084,233	+				-0.1
4,084,233	+				-1.0
4,084,233	+				-0.6
4,084,233	+				-0.9
4,084,233	+				-2.1
4,084,233	+				+1.2
4,084,234	-				+0.2
4,084,234	-				+1.5
4,084,234	-				+2.0
4,084,234	-				+0.4
4,084,393	-		Sama_3454	0.38	+0.6
4,084,400	+		Sama_3454	0.39	-1.3
4,084,401	-		Sama_3454	0.39	-0.5
4,084,475	-		Sama_3454	0.56	+0.7
4,084,475	-		Sama_3454	0.56	-1.5
4,084,485	+		Sama_3454	0.59	+0.1
4,084,485	+		Sama_3454	0.59	-0.1
4,084,485	+		Sama_3454	0.59	-1.7
4,084,485	+		Sama_3454	0.59	-0.1
4,084,485	+		Sama_3454	0.59	-1.9
4,084,485	+		Sama_3454	0.59	-1.1
4,084,486	-		Sama_3454	0.59	-0.4
4,084,488	+		Sama_3454	0.59	-0.6
4,084,489	-		Sama_3454	0.60	-2.3
4,084,573	+		Sama_3454	0.79	+0.2
4,084,574	-		Sama_3454	0.79	-1.4
4,084,612	+		Sama_3454	0.88	-0.5
4,084,613	-		Sama_3454	0.88	-0.7
4,084,613	-		Sama_3454	0.88	+0.2
4,084,613	-		Sama_3454	0.88	+0.1
4,084,634	+				+1.8
4,084,634	+				+0.4
4,084,634	+				+1.3
4,084,635	-				+0.8
4,084,635	-				-1.0
4,084,635	-				+1.1
4,084,664	-				+1.4
4,084,677	-				+1.4
4,084,742	+				-0.3
4,084,742	+				-0.4
4,084,742	+				+0.0
4,084,743	-				-1.1
4,084,743	-				-0.2
4,084,743	-				-1.3
4,084,743	-				-0.1
4,084,757	+		Sama_3455	0.12	-0.4
4,084,758	-		Sama_3455	0.12	-1.8
4,084,758	-		Sama_3455	0.12	-1.1
4,084,758	-		Sama_3455	0.12	-1.3
4,084,760	+		Sama_3455	0.12	+0.8
4,084,760	+		Sama_3455	0.12	-0.8
4,084,760	+		Sama_3455	0.12	+0.8
4,084,760	+		Sama_3455	0.12	+1.4
4,084,761	-		Sama_3455	0.12	-0.9
4,084,841	+		Sama_3455	0.22	+0.8
4,084,841	+		Sama_3455	0.22	-2.4
4,084,841	+		Sama_3455	0.22	-1.3
4,084,842	-		Sama_3455	0.22	+1.4
4,084,842	-		Sama_3455	0.22	-1.1
4,084,853	+		Sama_3455	0.23	+0.4
4,084,853	+		Sama_3455	0.23	-0.3
4,084,854	-		Sama_3455	0.23	+1.6
4,084,854	-		Sama_3455	0.23	+0.3
4,084,854	-		Sama_3455	0.23	-0.4
4,084,858	+		Sama_3455	0.24	-0.2
4,084,858	+		Sama_3455	0.24	+0.8
4,084,858	+		Sama_3455	0.24	+0.2
4,084,859	-		Sama_3455	0.24	-2.4
4,084,859	-		Sama_3455	0.24	+0.8
4,084,859	-		Sama_3455	0.24	-0.2
4,084,948	-		Sama_3455	0.35	+0.5
4,084,964	-		Sama_3455	0.37	-1.3
4,084,986	+		Sama_3455	0.39	+0.1
4,085,056	-		Sama_3455	0.48	-0.2
4,085,061	+		Sama_3455	0.48	+0.4
4,085,061	+		Sama_3455	0.48	-2.5
4,085,061	+		Sama_3455	0.48	+3.0
4,085,061	+		Sama_3455	0.48	+0.4
4,085,061	+		Sama_3455	0.48	-1.2
4,085,061	+		Sama_3455	0.48	+0.2
4,085,062	-		Sama_3455	0.48	+1.8
4,085,062	-		Sama_3455	0.48	-0.8
4,085,062	-		Sama_3455	0.48	-0.4
4,085,062	-		Sama_3455	0.48	-1.3
4,085,062	-		Sama_3455	0.48	-0.3
4,085,062	-		Sama_3455	0.48	-0.7
4,085,062	-		Sama_3455	0.48	+0.4
4,085,062	-		Sama_3455	0.48	-0.3
4,085,062	-		Sama_3455	0.48	+0.3
4,085,062	-		Sama_3455	0.48	-1.6
4,085,093	+		Sama_3455	0.52	+1.2
4,085,093	+		Sama_3455	0.52	+1.0
4,085,093	+		Sama_3455	0.52	-0.4
4,085,093	+		Sama_3455	0.52	-0.4
4,085,093	+		Sama_3455	0.52	+1.4
4,085,094	-		Sama_3455	0.52	+1.2
4,085,094	-		Sama_3455	0.52	-0.1
4,085,094	-		Sama_3455	0.52	+0.1
4,085,144	+		Sama_3455	0.58	-1.1
4,085,145	-		Sama_3455	0.59	+0.1
4,085,145	-		Sama_3455	0.59	+0.1
4,085,145	-		Sama_3455	0.59	+0.1
4,085,145	-		Sama_3455	0.59	-0.8
4,085,145	-		Sama_3455	0.59	-0.7
4,085,145	-		Sama_3455	0.59	-1.6
4,085,162	+		Sama_3455	0.61	+0.9
4,085,162	+		Sama_3455	0.61	+0.2
4,085,162	+		Sama_3455	0.61	-0.8
4,085,162	+		Sama_3455	0.61	+1.4
4,085,162	+		Sama_3455	0.61	-0.4
4,085,162	+		Sama_3455	0.61	-1.3
4,085,162	+		Sama_3455	0.61	+2.0
4,085,162	+		Sama_3455	0.61	-0.7
4,085,162	+		Sama_3455	0.61	+0.7
4,085,163	-		Sama_3455	0.61	-0.4
4,085,163	-		Sama_3455	0.61	+1.4
4,085,163	-		Sama_3455	0.61	-0.4
4,085,163	-		Sama_3455	0.61	-0.6
4,085,268	+		Sama_3455	0.73	-0.7
4,085,269	-		Sama_3455	0.74	-0.2
4,085,384	+		Sama_3455	0.88	-1.9
4,085,385	-		Sama_3455	0.88	+0.4
4,085,403	-		Sama_3455	0.90	+0.2
4,085,409	+				-0.9
4,085,409	+				+0.9
4,085,448	+				+0.0
4,085,448	+				-1.7
4,085,449	-				+1.1
4,085,449	-				+0.4
4,085,505	+				-1.0
4,085,506	-				+0.4
4,085,512	+				-1.0
4,085,512	+				+0.2
4,085,512	+				-1.2
4,085,513	-				+0.1
4,085,513	-				+0.5
4,085,517	+				+0.2
4,085,517	+				-1.4
4,085,517	+				+0.6
4,085,517	+				+0.0
4,085,517	+				-1.4
4,085,517	+				+0.8
4,085,517	+				+0.7
4,085,517	+				+0.5
4,085,517	+				-0.2
4,085,517	+				-2.3
4,085,517	+				-0.4
4,085,517	+				+0.5
4,085,517	+				-2.3
4,085,518	-				+0.5
4,085,518	-				+0.5
4,085,518	-				+0.7
4,085,518	-				+2.1
4,085,518	-				+0.6
4,085,518	-				-0.8
4,085,518	-				-0.6
4,085,518	-				-0.4
4,085,518	-				+1.9
4,085,518	-				+1.8
4,085,518	-				-0.2
4,085,519	+				-0.1
4,085,519	+				+0.6
4,085,519	+				+1.5
4,085,519	+				-0.9
4,085,520	-				+1.4
4,085,558	-				+0.4
4,085,558	-				+0.6
4,085,560	+				+1.1
4,085,561	-				-1.0
4,085,566	+				-0.1
4,085,566	+				+0.3
4,085,570	+				+1.6
4,085,570	+				-0.2
4,085,571	-				-0.2
4,085,594	+				-0.9
4,085,595	-				+0.6
4,085,603	-				+1.1
4,085,603	-				-0.2
4,085,609	+				+1.5
4,085,609	+				-1.1
4,085,609	+				-0.0
4,085,609	+				+0.2
4,085,610	-				+0.6
4,085,618	-				-1.6
4,085,713	+		Sama_3456	0.22	+1.9
4,085,714	-		Sama_3456	0.22	+0.7
4,085,714	-		Sama_3456	0.22	-0.9
4,085,714	-		Sama_3456	0.22	-0.6
4,085,714	-		Sama_3456	0.22	-0.9
4,085,714	-		Sama_3456	0.22	-1.3
4,085,794	+		Sama_3456	0.32	-0.4
4,085,795	-		Sama_3456	0.33	-0.8
4,085,825	-		Sama_3456	0.37	+0.6
4,085,825	-		Sama_3456	0.37	+0.2
4,085,836	+		Sama_3456	0.38	-1.0
4,085,860	-		Sama_3456	0.41	-0.7
4,085,860	-		Sama_3456	0.41	-1.9
4,085,860	-		Sama_3456	0.41	+0.2
4,085,860	-		Sama_3456	0.41	+0.1
4,085,860	-		Sama_3456	0.41	-0.3
4,085,956	+		Sama_3456	0.54	-0.2
4,085,957	-		Sama_3456	0.54	+0.4
4,086,012	+		Sama_3456	0.61	-0.6
4,086,012	+		Sama_3456	0.61	+0.1
4,086,012	+		Sama_3456	0.61	+2.4
4,086,012	+		Sama_3456	0.61	-1.5
4,086,012	+		Sama_3456	0.61	+1.4
4,086,012	+		Sama_3456	0.61	+2.4
4,086,013	-		Sama_3456	0.61	-0.8
4,086,013	-		Sama_3456	0.61	-0.5
4,086,026	-		Sama_3456	0.63	-0.8
4,086,079	-		Sama_3456	0.70	-0.1
4,086,081	+		Sama_3456	0.70	+1.0
4,086,081	+		Sama_3456	0.70	-0.1
4,086,081	+		Sama_3456	0.70	-0.6
4,086,081	+		Sama_3456	0.70	+0.2
4,086,081	+		Sama_3456	0.70	+0.8
4,086,082	-		Sama_3456	0.71	-0.3
4,086,082	-		Sama_3456	0.71	+0.3
4,086,107	+		Sama_3456	0.74	-0.3
4,086,135	+		Sama_3456	0.78	-0.1
4,086,135	+		Sama_3456	0.78	-0.7
4,086,135	+		Sama_3456	0.78	+0.4
4,086,136	-		Sama_3456	0.78	-0.2
4,086,136	-		Sama_3456	0.78	-1.2
4,086,136	-		Sama_3456	0.78	-0.8
4,086,157	+		Sama_3456	0.80	+0.3
4,086,158	-		Sama_3456	0.81	+2.1
4,086,158	-		Sama_3456	0.81	+1.4
4,086,166	+		Sama_3456	0.82	-0.1
4,086,167	-		Sama_3456	0.82	+0.6
4,086,220	+		Sama_3456	0.89	-0.6
4,086,220	+		Sama_3456	0.89	-1.1
4,086,221	-		Sama_3456	0.89	-0.6
4,086,287	+				-0.9
4,086,288	-				-0.3
4,086,288	-				-0.2
4,086,288	-				+0.8
4,086,288	-				+1.1
4,086,304	+				+1.2
4,086,438	-				+1.2
4,086,441	+				+0.3
4,086,441	+				+0.5
4,086,441	+				-0.4
4,086,441	+				-0.6
4,086,441	+				+0.9
4,086,441	+				-0.4
4,086,441	+				-0.2
4,086,441	+				+1.2
4,086,441	+				+0.1
4,086,441	+				+0.8
4,086,441	+				-1.7
4,086,441	+				+0.1
4,086,441	+				-0.3
4,086,442	-				+0.9
4,086,442	-				-1.3
4,086,442	-				-1.1
4,086,442	-				+1.1
4,086,442	-				-0.4
4,086,442	-				+0.8
4,086,442	-				+2.2
4,086,442	-				+0.8
4,086,442	-				-0.2
4,086,442	-				+0.1
4,086,443	+				+0.5
4,086,443	+				+1.1
4,086,444	-				+0.8
4,086,460	-				-0.9
4,086,460	-				-0.1
4,086,460	-				-0.5