Strain Fitness in Shewanella amazonensis SB2B around Sama_2895

Experiment: L-Serine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Serine
3,437,468	+		Sama_2894	0.56	-0.7
3,437,469	-		Sama_2894	0.56	-0.3
3,437,469	-		Sama_2894	0.56	+1.0
3,437,469	-		Sama_2894	0.56	+1.5
3,437,481	+		Sama_2894	0.57	-0.0
3,437,520	+		Sama_2894	0.59	+2.0
3,437,520	+		Sama_2894	0.59	-0.3
3,437,520	+		Sama_2894	0.59	-0.8
3,437,520	+		Sama_2894	0.59	+2.5
3,437,521	-		Sama_2894	0.59	-0.1
3,437,521	-		Sama_2894	0.59	+1.2
3,437,521	-		Sama_2894	0.59	-1.3
3,437,521	-		Sama_2894	0.59	+0.4
3,437,538	+		Sama_2894	0.60	-0.3
3,437,539	-		Sama_2894	0.60	-0.5
3,437,539	-		Sama_2894	0.60	+0.8
3,437,539	-		Sama_2894	0.60	-1.2
3,437,604	+		Sama_2894	0.64	-0.1
3,437,726	+		Sama_2894	0.72	-1.1
3,437,731	+		Sama_2894	0.72	+1.1
3,437,731	+		Sama_2894	0.72	-1.1
3,437,731	+		Sama_2894	0.72	+0.5
3,437,732	-		Sama_2894	0.72	-0.5
3,437,732	-		Sama_2894	0.72	-1.3
3,437,770	+		Sama_2894	0.74	-1.4
3,437,770	+		Sama_2894	0.74	+0.0
3,437,770	+		Sama_2894	0.74	-0.5
3,437,770	+		Sama_2894	0.74	+0.5
3,437,770	+		Sama_2894	0.74	-0.3
3,437,771	-		Sama_2894	0.74	-1.0
3,437,771	-		Sama_2894	0.74	-0.3
3,437,771	-		Sama_2894	0.74	-0.3
3,437,771	-		Sama_2894	0.74	+1.7
3,437,771	-		Sama_2894	0.74	+1.0
3,437,771	-		Sama_2894	0.74	+0.7
3,437,802	+		Sama_2894	0.76	+1.6
3,437,824	-		Sama_2894	0.78	-0.8
3,437,824	-		Sama_2894	0.78	+0.9
3,437,824	-		Sama_2894	0.78	-0.0
3,437,912	-		Sama_2894	0.83	-0.7
3,438,117	-				-2.6
3,438,146	+				-0.8
3,438,147	-				-1.0
3,438,225	+				-0.4
3,438,225	+				-0.1
3,438,225	+				-0.3
3,438,226	-				-1.0
3,438,226	-				+0.0
3,438,237	+				-1.2
3,438,270	+				-1.1
3,438,270	+				+1.0
3,438,270	+				+2.0
3,438,270	+				-0.5
3,438,270	+				-0.3
3,438,271	-				+0.2
3,438,271	-				-0.8
3,438,271	-				-0.7
3,438,271	-				+0.2
3,438,271	-				+0.6
3,438,271	-				+0.5
3,438,271	-				+0.7
3,438,299	+				-0.8
3,438,341	-				-0.5
3,438,485	+				-1.5
3,438,485	+				-2.0
3,438,486	-				-0.7
3,438,486	-				-1.5
3,438,486	-				-1.4
3,438,623	-				+0.8
3,438,635	+		Sama_2895	0.10	-2.3
3,438,636	-		Sama_2895	0.10	-1.4
3,438,636	-		Sama_2895	0.10	+1.5
3,438,636	-		Sama_2895	0.10	+0.0
3,438,636	-		Sama_2895	0.10	-2.1
3,438,714	+		Sama_2895	0.15	+1.3
3,438,714	+		Sama_2895	0.15	+0.7
3,438,715	-		Sama_2895	0.15	-0.2
3,438,771	-		Sama_2895	0.18	+0.3
3,438,771	-		Sama_2895	0.18	+0.6
3,438,772	+		Sama_2895	0.18	-1.9
3,438,772	+		Sama_2895	0.18	+1.6
3,438,772	+		Sama_2895	0.18	-0.5
3,438,772	+		Sama_2895	0.18	-1.5
3,438,773	-		Sama_2895	0.18	-0.9
3,438,773	-		Sama_2895	0.18	+1.3
3,438,773	-		Sama_2895	0.18	-1.0
3,438,773	-		Sama_2895	0.18	-0.5
3,438,773	-		Sama_2895	0.18	+1.5
3,438,824	+		Sama_2895	0.21	-1.5
3,438,824	+		Sama_2895	0.21	+0.3
3,438,825	-		Sama_2895	0.21	-0.3
3,438,840	+		Sama_2895	0.22	+0.4
3,438,840	+		Sama_2895	0.22	-0.3
3,438,841	-		Sama_2895	0.22	+0.0
3,438,841	-		Sama_2895	0.22	+0.3
3,438,841	-		Sama_2895	0.22	-0.7
3,438,841	-		Sama_2895	0.22	-1.1
3,438,841	-		Sama_2895	0.22	-0.3
3,438,845	+		Sama_2895	0.23	-1.3
3,438,845	+		Sama_2895	0.23	+0.1
3,438,845	+		Sama_2895	0.23	-0.1
3,438,924	+		Sama_2895	0.27	-0.2
3,438,924	+		Sama_2895	0.27	-0.8
3,438,937	+		Sama_2895	0.28	-0.2
3,438,937	+		Sama_2895	0.28	+0.6
3,438,937	+		Sama_2895	0.28	-0.3
3,438,938	-		Sama_2895	0.28	+1.0
3,438,938	-		Sama_2895	0.28	+0.6
3,438,938	-		Sama_2895	0.28	+0.0
3,438,957	+		Sama_2895	0.29	-0.5
3,438,958	-		Sama_2895	0.29	-1.0
3,439,070	+		Sama_2895	0.36	+0.6
3,439,070	+		Sama_2895	0.36	+0.9
3,439,070	+		Sama_2895	0.36	+2.0
3,439,071	-		Sama_2895	0.36	-0.4
3,439,071	-		Sama_2895	0.36	-0.4
3,439,071	-		Sama_2895	0.36	-1.0
3,439,140	+		Sama_2895	0.40	+0.0
3,439,140	+		Sama_2895	0.40	+0.9
3,439,140	+		Sama_2895	0.40	+0.4
3,439,140	+		Sama_2895	0.40	+0.0
3,439,140	+		Sama_2895	0.40	+0.5
3,439,140	+		Sama_2895	0.40	-0.0
3,439,141	-		Sama_2895	0.40	+0.5
3,439,173	+		Sama_2895	0.42	-0.9
3,439,173	+		Sama_2895	0.42	+1.0
3,439,174	-		Sama_2895	0.42	+0.0
3,439,177	+		Sama_2895	0.42	+0.8
3,439,177	+		Sama_2895	0.42	-0.2
3,439,178	-		Sama_2895	0.42	-0.0
3,439,459	+		Sama_2895	0.58	-0.5
3,439,459	+		Sama_2895	0.58	-0.1
3,439,459	+		Sama_2895	0.58	-0.7
3,439,459	+		Sama_2895	0.58	+0.7
3,439,460	-		Sama_2895	0.59	+1.0
3,439,460	-		Sama_2895	0.59	-0.8
3,439,460	-		Sama_2895	0.59	-0.4
3,439,460	-		Sama_2895	0.59	+0.0
3,439,460	-		Sama_2895	0.59	-0.8
3,439,460	-		Sama_2895	0.59	-0.2
3,439,460	-		Sama_2895	0.59	-0.8
3,439,460	-		Sama_2895	0.59	-0.4
3,439,478	+		Sama_2895	0.60	-2.0
3,439,478	+		Sama_2895	0.60	-1.4
3,439,479	-		Sama_2895	0.60	+0.8
3,439,493	+		Sama_2895	0.60	+0.6
3,439,494	-		Sama_2895	0.61	-0.5
3,439,500	-		Sama_2895	0.61	-1.0
3,439,589	+		Sama_2895	0.66	-0.3
3,439,672	+		Sama_2895	0.71	-1.0
3,439,672	+		Sama_2895	0.71	-0.7
3,439,673	-		Sama_2895	0.71	+0.6
3,439,673	-		Sama_2895	0.71	+0.3
3,439,673	-		Sama_2895	0.71	+1.0
3,439,681	+		Sama_2895	0.71	+0.8
3,439,681	+		Sama_2895	0.71	+0.0
3,439,709	+		Sama_2895	0.73	-0.3
3,439,710	-		Sama_2895	0.73	+0.7
3,439,747	-		Sama_2895	0.75	+0.5
3,439,766	+		Sama_2895	0.76	+1.8
3,439,766	+		Sama_2895	0.76	+0.7
3,439,766	+		Sama_2895	0.76	+0.7
3,439,767	-		Sama_2895	0.76	-0.5
3,439,808	+		Sama_2895	0.79	-0.1
3,439,808	+		Sama_2895	0.79	-0.7
3,439,808	+		Sama_2895	0.79	+0.1
3,439,808	+		Sama_2895	0.79	-1.1
3,439,810	+		Sama_2895	0.79	+0.0
3,439,810	+		Sama_2895	0.79	+2.0
3,439,810	+		Sama_2895	0.79	-0.1
3,439,810	+		Sama_2895	0.79	+3.0
3,439,811	-		Sama_2895	0.79	+1.0
3,439,811	-		Sama_2895	0.79	+0.2
3,439,811	-		Sama_2895	0.79	-0.5
3,439,811	-		Sama_2895	0.79	+0.5
3,439,811	-		Sama_2895	0.79	+0.8
3,439,811	-		Sama_2895	0.79	-0.5
3,439,811	-		Sama_2895	0.79	-0.5
3,439,811	-		Sama_2895	0.79	-0.6
3,439,886	-		Sama_2895	0.83	-0.5
3,439,886	-		Sama_2895	0.83	-1.0
3,439,892	+		Sama_2895	0.84	+0.5
3,439,892	+		Sama_2895	0.84	-0.1
3,439,892	+		Sama_2895	0.84	+0.9
3,439,892	+		Sama_2895	0.84	+1.0
3,439,892	+		Sama_2895	0.84	+0.2
3,439,893	-		Sama_2895	0.84	+0.4
3,439,893	-		Sama_2895	0.84	-0.9
3,439,894	+		Sama_2895	0.84	-0.3
3,439,894	+		Sama_2895	0.84	+1.0
3,439,894	+		Sama_2895	0.84	-0.4
3,439,894	+		Sama_2895	0.84	+1.3
3,439,894	+		Sama_2895	0.84	+0.2
3,439,894	+		Sama_2895	0.84	-0.8
3,439,894	+		Sama_2895	0.84	+0.5
3,439,894	+		Sama_2895	0.84	-0.5
3,439,894	+		Sama_2895	0.84	+0.3
3,439,895	-		Sama_2895	0.84	-0.4
3,439,895	-		Sama_2895	0.84	-1.0
3,439,895	-		Sama_2895	0.84	-1.5
3,439,895	-		Sama_2895	0.84	+0.2
3,439,895	-		Sama_2895	0.84	+0.0
3,439,895	-		Sama_2895	0.84	+1.0
3,439,895	-		Sama_2895	0.84	+3.0
3,439,895	-		Sama_2895	0.84	-0.7
3,439,895	-		Sama_2895	0.84	-0.5
3,439,900	+		Sama_2895	0.84	+0.5
3,439,900	+		Sama_2895	0.84	+0.5
3,439,900	+		Sama_2895	0.84	-0.1
3,439,900	+		Sama_2895	0.84	+0.8
3,439,901	-		Sama_2895	0.84	+1.3
3,439,901	-		Sama_2895	0.84	-0.4
3,439,901	-		Sama_2895	0.84	-0.1
3,439,901	-		Sama_2895	0.84	-2.0
3,439,901	-		Sama_2895	0.84	+1.2
3,439,901	-		Sama_2895	0.84	+0.7
3,439,928	+		Sama_2895	0.86	+0.5
3,440,002	+				+0.0
3,440,002	+				-0.8
3,440,002	+				-0.3
3,440,003	-				-0.3
3,440,012	+				+1.2
3,440,062	+				+0.0
3,440,062	+				-0.2
3,440,063	-				-0.2
3,440,063	-				-1.1
3,440,063	-				+1.5
3,440,111	-				+0.5
3,440,116	+				+0.3
3,440,117	-				+0.0
3,440,117	-				+1.3
3,440,191	+				-0.0
3,440,192	-				-1.8
3,440,193	+				-1.0
3,440,193	+				+0.0
3,440,193	+				+1.0
3,440,193	+				-0.5
3,440,194	-				-0.3
3,440,194	-				+1.3
3,440,194	-				-1.5
3,440,195	+				-1.1
3,440,195	+				-1.0
3,440,195	+				-0.5
3,440,195	+				+0.5
3,440,195	+				-1.9
3,440,195	+				-0.4
3,440,195	+				-0.4
3,440,196	-				+0.9
3,440,196	-				+0.3
3,440,196	-				+0.5
3,440,196	-				-1.5
3,440,196	-				+0.7
3,440,196	-				+0.2
3,440,196	-				-2.3
3,440,196	-				-1.3
3,440,196	-				-0.7
3,440,196	-				+1.5
3,440,196	-				+0.0
3,440,196	-				+0.5
3,440,242	-				-0.6
3,440,242	-				+0.2
3,440,242	-				+1.0
3,440,250	-				+0.4
3,440,294	+				+0.8
3,440,294	+				-1.8
3,440,294	+				+0.3
3,440,294	+				-1.8
3,440,295	-				-0.8
3,440,295	-				-1.0
3,440,295	-				-0.3
3,440,310	+				-1.4
3,440,310	+				+0.6
3,440,311	-				-0.3
3,440,437	-				-1.3
3,440,437	-				+0.3
3,440,437	-				-1.6
3,440,494	-				+0.2
3,440,507	+				+0.9
3,440,507	+				+1.4
3,440,517	+				+0.6
3,440,517	+				+2.2
3,440,518	-				+0.5
3,440,523	+				+1.0
3,440,523	+				+0.0
3,440,524	-				+1.0
3,440,524	-				+0.4
3,440,524	-				+1.5
3,440,524	-				+2.4
3,440,526	-				-0.2
3,440,526	-				+0.2
3,440,606	-				-0.8
3,440,606	-				+0.0
3,440,616	+				-1.3
3,440,623	+				-0.9
3,440,624	-				+1.0
3,440,624	-				+0.0
3,440,624	-				-0.4
3,440,627	+				-1.5
3,440,629	+				-0.5
3,440,719	+				-0.9
3,440,719	+				-0.1
3,440,719	+				-1.0
3,440,719	+				-1.6
3,440,768	+				+0.2
3,440,768	+				-0.8
3,440,768	+				-0.9
3,440,769	-				-0.5
3,440,794	+				-1.7
3,440,795	-				+0.0
3,440,795	-				-0.8
3,440,795	-				-0.8
3,440,809	+				+0.0
3,440,809	+				-0.2
3,440,809	+				+0.4
3,440,810	-				+1.0
3,440,810	-				-1.1
3,440,810	-				+1.8
3,440,810	-				-1.3
3,440,810	-				+0.5
3,440,812	+				-0.5
3,440,812	+				+0.0
3,440,812	+				+0.2
3,440,813	-				-1.7
3,440,813	-				-0.9
3,440,813	-				-0.1
3,440,813	-				+1.0
3,440,813	-				-0.7
3,440,813	-				+0.8
3,440,815	+				+0.0
3,440,833	+				-0.3
3,440,834	-				+0.5
3,440,852	-				+0.6
3,440,897	+				+0.8
3,440,897	+				-0.0
3,440,897	+				+0.5
3,440,950	+				-0.5
3,440,950	+				-0.2
3,440,950	+				+0.8
3,440,951	-				+0.0
3,440,955	+				+1.0
3,440,955	+				+2.3
3,440,955	+				+1.0
3,440,955	+				-0.1
3,440,956	-				+0.7
3,440,956	-				-1.7
3,440,956	-				-0.4
3,440,956	-				-0.9
3,440,956	-				+0.5
3,440,956	-				+0.7
3,440,956	-				-0.5
3,440,979	-				-0.5
3,440,979	-				+0.5
3,440,979	-				-0.5
3,440,979	-				-0.7
3,440,989	+				+0.8
3,440,989	+				+2.6
3,440,989	+				-0.3
3,440,989	+				-1.4
3,440,989	+				+0.3
3,440,989	+				+1.8
3,440,989	+				-0.8
3,440,989	+				-0.8
3,440,989	+				+0.3
3,440,990	-				+0.9
3,440,990	-				-0.0
3,440,990	-				+1.3
3,440,990	-				+0.4
3,440,990	-				+0.5
3,440,990	-				-1.2
3,440,990	-				-1.1
3,440,990	-				-0.2
3,440,990	-				-0.8
3,441,028	+				-1.0
3,441,028	+				+0.7
3,441,028	+				+0.0
3,441,028	+				+0.3
3,441,028	+				-0.5
3,441,028	+				-0.7
3,441,029	-				+0.6
3,441,029	-				-0.7
3,441,040	+				+0.5
3,441,043	+				-0.3
3,441,043	+				-0.8
3,441,043	+				+0.4
3,441,043	+				+1.0
3,441,044	-				+0.1
3,441,044	-				+0.4
3,441,044	-				-0.4
3,441,044	-				+1.3
3,441,044	-				+1.0
3,441,059	+		Sama_2896	0.11	+0.2
3,441,059	+		Sama_2896	0.11	+1.2
3,441,059	+		Sama_2896	0.11	-0.3
3,441,060	-		Sama_2896	0.11	-0.4