Strain Fitness in Shewanella amazonensis SB2B around Sama_2244

Experiment: L-Serine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Serine
2,707,280	-		Sama_2243	0.40	-1.1
2,707,291	-		Sama_2243	0.41	-1.5
2,707,291	-		Sama_2243	0.41	-0.8
2,707,291	-		Sama_2243	0.41	-0.5
2,707,291	-		Sama_2243	0.41	+0.3
2,707,325	-		Sama_2243	0.43	+0.8
2,707,325	-		Sama_2243	0.43	-0.2
2,707,325	-		Sama_2243	0.43	+0.8
2,707,370	-		Sama_2243	0.47	+0.3
2,707,424	-		Sama_2243	0.51	+1.5
2,707,501	-		Sama_2243	0.56	-0.4
2,707,607	-		Sama_2243	0.64	-1.5
2,707,609	-		Sama_2243	0.64	-0.1
2,707,742	-		Sama_2243	0.74	-2.2
2,707,747	+		Sama_2243	0.75	-1.9
2,707,748	-		Sama_2243	0.75	+0.4
2,707,751	-		Sama_2243	0.75	+0.6
2,707,763	-		Sama_2243	0.76	-0.2
2,707,766	-		Sama_2243	0.76	-1.1
2,707,766	-		Sama_2243	0.76	+1.5
2,707,776	+		Sama_2243	0.77	+0.2
2,707,777	-		Sama_2243	0.77	-0.3
2,707,779	+		Sama_2243	0.77	+0.2
2,707,780	-		Sama_2243	0.77	+0.2
2,707,786	+		Sama_2243	0.77	-0.2
2,707,787	-		Sama_2243	0.77	+0.1
2,707,787	-		Sama_2243	0.77	-1.7
2,707,787	-		Sama_2243	0.77	-0.5
2,707,834	+		Sama_2243	0.81	+0.6
2,707,834	+		Sama_2243	0.81	-0.2
2,707,834	+		Sama_2243	0.81	-2.1
2,707,835	-		Sama_2243	0.81	+0.2
2,707,840	-		Sama_2243	0.81	+0.0
2,707,927	+		Sama_2243	0.88	-0.3
2,707,927	+		Sama_2243	0.88	-1.1
2,707,928	-		Sama_2243	0.88	-1.5
2,707,928	-		Sama_2243	0.88	-1.9
2,707,928	-		Sama_2243	0.88	-1.5
2,707,928	-		Sama_2243	0.88	-0.5
2,707,928	-		Sama_2243	0.88	-1.9
2,707,928	-		Sama_2243	0.88	-0.4
2,707,930	-		Sama_2243	0.88	-1.7
2,707,930	-		Sama_2243	0.88	-0.7
2,707,930	-		Sama_2243	0.88	-1.9
2,707,973	-				+0.1
2,707,994	-				-0.8
2,708,060	+				-0.2
2,708,061	-				-0.1
2,708,061	-				-1.1
2,708,092	+				-0.7
2,708,092	+				-0.5
2,708,092	+				-0.1
2,708,092	+				-1.4
2,708,092	+				-1.1
2,708,092	+				+1.0
2,708,092	+				-0.6
2,708,092	+				-0.3
2,708,093	-				+1.1
2,708,093	-				-0.5
2,708,093	-				+1.2
2,708,126	-				-0.5
2,708,145	+				+0.7
2,708,146	-				-1.3
2,708,156	-				+0.2
2,708,160	-				-1.8
2,708,160	-				-0.4
2,708,184	-				+0.7
2,708,205	-				-1.6
2,708,258	-				+0.9
2,708,263	+				+3.4
2,708,264	-				+0.5
2,708,264	-				+1.1
2,708,264	-				+1.4
2,708,293	-				+1.2
2,708,375	-				+4.0
2,708,399	-		Sama_2244	0.10	+4.7
2,708,421	+		Sama_2244	0.11	+5.6
2,708,422	-		Sama_2244	0.11	+5.5
2,708,532	+		Sama_2244	0.17	+3.0
2,708,532	+		Sama_2244	0.17	+5.4
2,708,533	-		Sama_2244	0.17	+5.6
2,708,618	-		Sama_2244	0.21	+4.7
2,708,635	+		Sama_2244	0.22	+5.2
2,708,635	+		Sama_2244	0.22	+5.2
2,708,636	-		Sama_2244	0.22	+3.3
2,708,636	-		Sama_2244	0.22	+4.9
2,708,636	-		Sama_2244	0.22	+4.6
2,708,636	-		Sama_2244	0.22	+3.5
2,708,636	-		Sama_2244	0.22	+3.9
2,708,636	-		Sama_2244	0.22	+5.1
2,708,636	-		Sama_2244	0.22	+4.3
2,708,636	-		Sama_2244	0.22	+3.1
2,708,637	+		Sama_2244	0.22	+6.0
2,708,638	-		Sama_2244	0.22	+3.3
2,708,722	-		Sama_2244	0.27	+4.3
2,708,786	-		Sama_2244	0.30	+5.5
2,708,786	-		Sama_2244	0.30	+2.8
2,708,786	-		Sama_2244	0.30	+3.0
2,708,786	-		Sama_2244	0.30	+5.2
2,708,806	-		Sama_2244	0.31	+4.1
2,708,875	-		Sama_2244	0.35	+4.0
2,708,962	-		Sama_2244	0.39	+4.8
2,708,963	+		Sama_2244	0.39	+2.5
2,708,964	-		Sama_2244	0.39	+4.7
2,708,964	-		Sama_2244	0.39	+3.2
2,708,977	+		Sama_2244	0.40	+4.6
2,708,978	-		Sama_2244	0.40	+4.3
2,708,978	-		Sama_2244	0.40	+2.7
2,708,978	-		Sama_2244	0.40	+4.8
2,708,983	-		Sama_2244	0.40	+3.4
2,708,983	-		Sama_2244	0.40	+4.8
2,708,999	-		Sama_2244	0.41	+3.0
2,709,031	-		Sama_2244	0.43	+4.0
2,709,031	-		Sama_2244	0.43	+3.9
2,709,031	-		Sama_2244	0.43	+5.7
2,709,031	-		Sama_2244	0.43	+4.1
2,709,031	-		Sama_2244	0.43	+3.7
2,709,031	-		Sama_2244	0.43	+3.0
2,709,031	-		Sama_2244	0.43	+6.5
2,709,031	-		Sama_2244	0.43	+3.8
2,709,118	-		Sama_2244	0.47	+4.5
2,709,124	+		Sama_2244	0.48	+3.7
2,709,125	-		Sama_2244	0.48	+5.2
2,709,154	-		Sama_2244	0.49	+6.2
2,709,183	-		Sama_2244	0.51	+2.9
2,709,183	-		Sama_2244	0.51	+5.4
2,709,183	-		Sama_2244	0.51	+5.2
2,709,236	-		Sama_2244	0.53	+4.5
2,709,236	-		Sama_2244	0.53	+4.1
2,709,236	-		Sama_2244	0.53	+6.1
2,709,236	-		Sama_2244	0.53	+4.7
2,709,239	-		Sama_2244	0.54	+5.2
2,709,239	-		Sama_2244	0.54	+5.0
2,709,355	+		Sama_2244	0.60	+5.3
2,709,355	+		Sama_2244	0.60	+1.9
2,709,356	-		Sama_2244	0.60	+5.2
2,709,356	-		Sama_2244	0.60	+4.2
2,709,356	-		Sama_2244	0.60	+4.3
2,709,356	-		Sama_2244	0.60	+4.8
2,709,356	-		Sama_2244	0.60	+4.2
2,709,396	+		Sama_2244	0.62	+5.3
2,709,396	+		Sama_2244	0.62	+5.2
2,709,397	-		Sama_2244	0.62	+3.3
2,709,397	-		Sama_2244	0.62	+3.4
2,709,399	+		Sama_2244	0.62	+0.5
2,709,410	-		Sama_2244	0.62	+4.0
2,709,410	-		Sama_2244	0.62	+5.8
2,709,538	-		Sama_2244	0.69	+5.8
2,709,538	-		Sama_2244	0.69	+4.7
2,709,538	-		Sama_2244	0.69	+3.3
2,709,538	-		Sama_2244	0.69	+5.3
2,709,574	+		Sama_2244	0.71	+4.6
2,709,575	-		Sama_2244	0.71	+4.3
2,709,575	-		Sama_2244	0.71	+2.9
2,709,575	-		Sama_2244	0.71	+4.9
2,709,575	-		Sama_2244	0.71	+1.2
2,709,636	-		Sama_2244	0.74	+3.1
2,709,680	-		Sama_2244	0.76	+4.8
2,709,692	+		Sama_2244	0.77	+3.6
2,709,693	-		Sama_2244	0.77	+3.7
2,709,693	-		Sama_2244	0.77	+4.8
2,709,693	-		Sama_2244	0.77	+5.8
2,709,773	-		Sama_2244	0.81	+4.9
2,709,834	-		Sama_2244	0.84	+4.7
2,709,862	-		Sama_2244	0.86	+4.3
2,709,862	-		Sama_2244	0.86	+4.4
2,709,862	-		Sama_2244	0.86	+4.1
2,709,909	-		Sama_2244	0.88	+2.9
2,709,909	-		Sama_2244	0.88	+3.8
2,709,927	-		Sama_2244	0.89	+3.8
2,709,955	-				+5.2
2,709,955	-				+3.2
2,709,978	+				+5.3
2,709,979	-				+3.0
2,709,979	-				+2.5
2,710,000	-				+4.2
2,710,108	-				+4.7
2,710,199	-				+0.5
2,710,199	-				-1.7
2,710,271	-		Sama_2245	0.14	-0.8
2,710,291	+		Sama_2245	0.18	+2.1
2,710,292	-		Sama_2245	0.18	-0.1
2,710,292	-		Sama_2245	0.18	+0.5
2,710,292	-		Sama_2245	0.18	+0.5
2,710,292	-		Sama_2245	0.18	-0.5
2,710,292	-		Sama_2245	0.18	+0.1
2,710,300	-		Sama_2245	0.19	+0.6
2,710,300	-		Sama_2245	0.19	-0.5
2,710,300	-		Sama_2245	0.19	+0.3
2,710,333	-		Sama_2245	0.25	-1.1
2,710,333	-		Sama_2245	0.25	-1.3
2,710,333	-		Sama_2245	0.25	-0.4
2,710,335	-		Sama_2245	0.25	-1.5
2,710,335	-		Sama_2245	0.25	+0.0
2,710,335	-		Sama_2245	0.25	-1.7
2,710,372	-		Sama_2245	0.32	-0.8
2,710,379	-		Sama_2245	0.33	+0.9
2,710,382	-		Sama_2245	0.33	-0.3
2,710,396	+		Sama_2245	0.36	-0.6
2,710,396	+		Sama_2245	0.36	+1.4
2,710,397	-		Sama_2245	0.36	-0.8
2,710,397	-		Sama_2245	0.36	-0.4
2,710,397	-		Sama_2245	0.36	-1.1
2,710,415	-		Sama_2245	0.39	+1.3
2,710,415	-		Sama_2245	0.39	-1.3
2,710,517	-		Sama_2245	0.57	-0.8
2,710,520	-		Sama_2245	0.57	+0.5
2,710,520	-		Sama_2245	0.57	-0.1
2,710,551	+		Sama_2245	0.63	+0.3
2,710,552	-		Sama_2245	0.63	-0.5
2,710,561	-		Sama_2245	0.64	-0.8
2,710,567	+		Sama_2245	0.65	-0.1
2,710,568	-		Sama_2245	0.65	-1.7
2,710,568	-		Sama_2245	0.65	-0.6
2,710,713	-				-0.4
2,710,747	-				-0.9
2,710,793	-				+0.5
2,710,865	-		Sama_2246	0.11	+1.6
2,710,907	+		Sama_2246	0.16	+1.5
2,710,943	-		Sama_2246	0.20	-1.5
2,710,943	-		Sama_2246	0.20	-0.2