Strain Fitness in Shewanella amazonensis SB2B around Sama_1335

Experiment: L-Serine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_1334 and Sama_1335 are separated by 197 nucleotidesSama_1335 and Sama_1336 are separated by 30 nucleotides Sama_1334: Sama_1334 - LolC/E family lipoprotein releasing system, transmembrane protein (RefSeq), at 1,625,401 to 1,626,663 _1334 Sama_1335: Sama_1335 - hypothetical protein (RefSeq), at 1,626,861 to 1,627,370 _1335 Sama_1336: Sama_1336 - DNA internalization-related competence protein ComEC/Rec2 (RefSeq), at 1,627,401 to 1,629,698 _1336 Position (kb) 1626 1627 1628Strain fitness (log2 ratio) -2 -1 0 1 2at 1626.784 kb on + strandat 1626.785 kb on - strandat 1626.803 kb on - strandat 1627.371 kb on - strandat 1627.395 kb on - strandat 1627.395 kb on - strandat 1627.395 kb on - strandat 1627.570 kb on - strandat 1627.578 kb on - strandat 1627.637 kb on - strand, within Sama_1336at 1627.637 kb on - strand, within Sama_1336at 1627.640 kb on - strand, within Sama_1336at 1627.640 kb on - strand, within Sama_1336at 1627.640 kb on - strand, within Sama_1336at 1627.640 kb on - strand, within Sama_1336at 1627.675 kb on + strand, within Sama_1336at 1627.675 kb on + strand, within Sama_1336at 1627.675 kb on + strand, within Sama_1336at 1627.675 kb on + strand, within Sama_1336at 1627.675 kb on + strand, within Sama_1336at 1627.676 kb on - strand, within Sama_1336at 1627.676 kb on - strand, within Sama_1336at 1627.676 kb on - strand, within Sama_1336at 1627.676 kb on - strand, within Sama_1336at 1627.676 kb on - strand, within Sama_1336at 1627.676 kb on - strand, within Sama_1336at 1627.676 kb on - strand, within Sama_1336at 1627.679 kb on + strand, within Sama_1336at 1627.679 kb on + strand, within Sama_1336at 1627.679 kb on + strand, within Sama_1336at 1627.679 kb on + strand, within Sama_1336at 1627.679 kb on + strand, within Sama_1336at 1627.679 kb on - strand, within Sama_1336at 1627.679 kb on + strand, within Sama_1336at 1627.680 kb on - strand, within Sama_1336at 1627.680 kb on - strand, within Sama_1336at 1627.680 kb on - strand, within Sama_1336at 1627.680 kb on - strand, within Sama_1336at 1627.680 kb on - strand, within Sama_1336at 1627.680 kb on - strand, within Sama_1336at 1627.680 kb on - strand, within Sama_1336at 1627.680 kb on - strand, within Sama_1336at 1627.680 kb on - strand, within Sama_1336at 1627.680 kb on - strand, within Sama_1336at 1627.680 kb on - strand, within Sama_1336at 1627.681 kb on + strand, within Sama_1336at 1627.681 kb on + strand, within Sama_1336at 1627.681 kb on + strand, within Sama_1336at 1627.681 kb on + strand, within Sama_1336at 1627.681 kb on + strand, within Sama_1336at 1627.681 kb on + strand, within Sama_1336at 1627.681 kb on + strand, within Sama_1336at 1627.681 kb on + strand, within Sama_1336at 1627.681 kb on + strand, within Sama_1336at 1627.681 kb on + strand, within Sama_1336at 1627.681 kb on + strand, within Sama_1336at 1627.681 kb on + strand, within Sama_1336at 1627.681 kb on + strand, within Sama_1336at 1627.681 kb on + strand, within Sama_1336at 1627.681 kb on + strand, within Sama_1336at 1627.681 kb on + strand, within Sama_1336at 1627.681 kb on + strand, within Sama_1336at 1627.681 kb on + strand, within Sama_1336at 1627.681 kb on + strand, within Sama_1336at 1627.681 kb on + strand, within Sama_1336at 1627.681 kb on + strand, within Sama_1336at 1627.681 kb on + strand, within Sama_1336at 1627.681 kb on + strand, within Sama_1336at 1627.681 kb on + strand, within Sama_1336at 1627.682 kb on - strand, within Sama_1336at 1627.682 kb on - strand, within Sama_1336at 1627.682 kb on - strand, within Sama_1336at 1627.682 kb on - strand, within Sama_1336at 1627.682 kb on - strand, within Sama_1336at 1627.682 kb on - strand, within Sama_1336at 1627.682 kb on - strand, within Sama_1336at 1627.682 kb on - strand, within Sama_1336at 1627.682 kb on - strand, within Sama_1336at 1627.682 kb on - strand, within Sama_1336at 1627.682 kb on - strand, within Sama_1336at 1627.682 kb on - strand, within Sama_1336at 1627.682 kb on - strand, within Sama_1336at 1627.682 kb on - strand, within Sama_1336at 1627.682 kb on - strand, within Sama_1336at 1627.682 kb on - strand, within Sama_1336at 1627.682 kb on - strand, within Sama_1336at 1627.682 kb on - strand, within Sama_1336at 1627.682 kb on - strand, within Sama_1336at 1627.682 kb on - strand, within Sama_1336at 1627.682 kb on - strand, within Sama_1336at 1627.682 kb on - strand, within Sama_1336at 1627.682 kb on - strand, within Sama_1336at 1627.682 kb on - strand, within Sama_1336at 1627.682 kb on - strand, within Sama_1336at 1627.702 kb on + strand, within Sama_1336at 1627.724 kb on + strand, within Sama_1336at 1627.843 kb on - strand, within Sama_1336at 1627.849 kb on + strand, within Sama_1336at 1627.924 kb on + strand, within Sama_1336at 1627.927 kb on + strand, within Sama_1336at 1627.928 kb on - strand, within Sama_1336at 1627.928 kb on - strand, within Sama_1336at 1627.928 kb on - strand, within Sama_1336at 1628.011 kb on + strand, within Sama_1336at 1628.011 kb on + strand, within Sama_1336at 1628.011 kb on + strand, within Sama_1336at 1628.011 kb on + strand, within Sama_1336at 1628.011 kb on + strand, within Sama_1336at 1628.011 kb on + strand, within Sama_1336at 1628.011 kb on + strand, within Sama_1336at 1628.012 kb on - strand, within Sama_1336at 1628.012 kb on - strand, within Sama_1336at 1628.012 kb on - strand, within Sama_1336at 1628.012 kb on - strand, within Sama_1336at 1628.081 kb on + strand, within Sama_1336at 1628.081 kb on + strand, within Sama_1336at 1628.081 kb on + strand, within Sama_1336at 1628.081 kb on + strand, within Sama_1336at 1628.081 kb on + strand, within Sama_1336at 1628.081 kb on + strand, within Sama_1336at 1628.081 kb on + strand, within Sama_1336at 1628.081 kb on + strand, within Sama_1336at 1628.081 kb on + strand, within Sama_1336at 1628.081 kb on + strand, within Sama_1336at 1628.081 kb on + strand, within Sama_1336at 1628.081 kb on + strand, within Sama_1336at 1628.081 kb on + strand, within Sama_1336at 1628.081 kb on + strand, within Sama_1336at 1628.081 kb on + strand, within Sama_1336at 1628.081 kb on + strand, within Sama_1336at 1628.081 kb on + strand, within Sama_1336at 1628.082 kb on - strand, within Sama_1336at 1628.082 kb on - strand, within Sama_1336at 1628.082 kb on - strand, within Sama_1336at 1628.082 kb on - strand, within Sama_1336at 1628.082 kb on - strand, within Sama_1336at 1628.082 kb on - strand, within Sama_1336at 1628.082 kb on - strand, within Sama_1336at 1628.082 kb on - strand, within Sama_1336at 1628.082 kb on - strand, within Sama_1336at 1628.082 kb on - strand, within Sama_1336at 1628.082 kb on - strand, within Sama_1336at 1628.082 kb on - strand, within Sama_1336at 1628.082 kb on - strand, within Sama_1336at 1628.159 kb on + strand, within Sama_1336at 1628.160 kb on - strand, within Sama_1336at 1628.179 kb on + strand, within Sama_1336at 1628.180 kb on - strand, within Sama_1336at 1628.205 kb on + strand, within Sama_1336at 1628.205 kb on + strand, within Sama_1336at 1628.205 kb on + strand, within Sama_1336at 1628.206 kb on - strand, within Sama_1336at 1628.206 kb on - strand, within Sama_1336at 1628.206 kb on - strand, within Sama_1336at 1628.206 kb on - strand, within Sama_1336at 1628.206 kb on - strand, within Sama_1336at 1628.206 kb on - strand, within Sama_1336at 1628.250 kb on - strand, within Sama_1336at 1628.320 kb on - strand, within Sama_1336

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine
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1,626,784 + -0.6
1,626,785 - -1.0
1,626,803 - +0.8
1,627,371 - -0.8
1,627,395 - -0.9
1,627,395 - +0.1
1,627,395 - -0.2
1,627,570 - +0.4
1,627,578 - -0.4
1,627,637 - Sama_1336 0.10 -1.5
1,627,637 - Sama_1336 0.10 +1.8
1,627,640 - Sama_1336 0.10 +0.6
1,627,640 - Sama_1336 0.10 -0.3
1,627,640 - Sama_1336 0.10 -1.5
1,627,640 - Sama_1336 0.10 +0.1
1,627,675 + Sama_1336 0.12 -0.9
1,627,675 + Sama_1336 0.12 -1.1
1,627,675 + Sama_1336 0.12 +0.4
1,627,675 + Sama_1336 0.12 +1.7
1,627,675 + Sama_1336 0.12 +0.7
1,627,676 - Sama_1336 0.12 -0.6
1,627,676 - Sama_1336 0.12 -0.9
1,627,676 - Sama_1336 0.12 -1.1
1,627,676 - Sama_1336 0.12 -1.3
1,627,676 - Sama_1336 0.12 -1.0
1,627,676 - Sama_1336 0.12 -0.2
1,627,676 - Sama_1336 0.12 +0.3
1,627,679 + Sama_1336 0.12 +1.1
1,627,679 + Sama_1336 0.12 +0.1
1,627,679 + Sama_1336 0.12 -1.1
1,627,679 + Sama_1336 0.12 -1.4
1,627,679 + Sama_1336 0.12 -0.3
1,627,679 - Sama_1336 0.12 +1.0
1,627,679 + Sama_1336 0.12 -0.5
1,627,680 - Sama_1336 0.12 +1.0
1,627,680 - Sama_1336 0.12 +0.4
1,627,680 - Sama_1336 0.12 +0.4
1,627,680 - Sama_1336 0.12 +0.6
1,627,680 - Sama_1336 0.12 -1.3
1,627,680 - Sama_1336 0.12 -1.3
1,627,680 - Sama_1336 0.12 +0.5
1,627,680 - Sama_1336 0.12 +2.2
1,627,680 - Sama_1336 0.12 -1.2
1,627,680 - Sama_1336 0.12 -1.0
1,627,680 - Sama_1336 0.12 +1.1
1,627,681 + Sama_1336 0.12 -1.4
1,627,681 + Sama_1336 0.12 -0.6
1,627,681 + Sama_1336 0.12 -1.0
1,627,681 + Sama_1336 0.12 -0.0
1,627,681 + Sama_1336 0.12 -0.4
1,627,681 + Sama_1336 0.12 -0.1
1,627,681 + Sama_1336 0.12 -0.1
1,627,681 + Sama_1336 0.12 +0.4
1,627,681 + Sama_1336 0.12 +0.1
1,627,681 + Sama_1336 0.12 -0.1
1,627,681 + Sama_1336 0.12 +0.3
1,627,681 + Sama_1336 0.12 +0.1
1,627,681 + Sama_1336 0.12 -0.7
1,627,681 + Sama_1336 0.12 +0.9
1,627,681 + Sama_1336 0.12 -1.9
1,627,681 + Sama_1336 0.12 +0.3
1,627,681 + Sama_1336 0.12 -1.4
1,627,681 + Sama_1336 0.12 -0.8
1,627,681 + Sama_1336 0.12 +0.1
1,627,681 + Sama_1336 0.12 +0.1
1,627,681 + Sama_1336 0.12 +0.4
1,627,681 + Sama_1336 0.12 -0.4
1,627,681 + Sama_1336 0.12 -0.0
1,627,681 + Sama_1336 0.12 +0.5
1,627,682 - Sama_1336 0.12 +0.3
1,627,682 - Sama_1336 0.12 -0.3
1,627,682 - Sama_1336 0.12 +0.1
1,627,682 - Sama_1336 0.12 +0.4
1,627,682 - Sama_1336 0.12 +0.4
1,627,682 - Sama_1336 0.12 +1.4
1,627,682 - Sama_1336 0.12 -0.0
1,627,682 - Sama_1336 0.12 +2.0
1,627,682 - Sama_1336 0.12 +1.0
1,627,682 - Sama_1336 0.12 -0.2
1,627,682 - Sama_1336 0.12 +0.2
1,627,682 - Sama_1336 0.12 -0.3
1,627,682 - Sama_1336 0.12 +0.1
1,627,682 - Sama_1336 0.12 +0.7
1,627,682 - Sama_1336 0.12 +0.7
1,627,682 - Sama_1336 0.12 -0.5
1,627,682 - Sama_1336 0.12 -2.1
1,627,682 - Sama_1336 0.12 +2.6
1,627,682 - Sama_1336 0.12 +1.5
1,627,682 - Sama_1336 0.12 -1.8
1,627,682 - Sama_1336 0.12 +0.3
1,627,682 - Sama_1336 0.12 +1.0
1,627,682 - Sama_1336 0.12 +0.0
1,627,682 - Sama_1336 0.12 -0.3
1,627,682 - Sama_1336 0.12 +0.9
1,627,702 + Sama_1336 0.13 -1.3
1,627,724 + Sama_1336 0.14 -0.8
1,627,843 - Sama_1336 0.19 -0.2
1,627,849 + Sama_1336 0.19 -0.5
1,627,924 + Sama_1336 0.23 -1.2
1,627,927 + Sama_1336 0.23 -0.4
1,627,928 - Sama_1336 0.23 -0.6
1,627,928 - Sama_1336 0.23 -1.5
1,627,928 - Sama_1336 0.23 +0.1
1,628,011 + Sama_1336 0.27 +0.2
1,628,011 + Sama_1336 0.27 +0.7
1,628,011 + Sama_1336 0.27 -0.5
1,628,011 + Sama_1336 0.27 +0.1
1,628,011 + Sama_1336 0.27 +0.9
1,628,011 + Sama_1336 0.27 +0.6
1,628,011 + Sama_1336 0.27 -0.6
1,628,012 - Sama_1336 0.27 +0.3
1,628,012 - Sama_1336 0.27 +0.7
1,628,012 - Sama_1336 0.27 -0.9
1,628,012 - Sama_1336 0.27 +0.8
1,628,081 + Sama_1336 0.30 +0.2
1,628,081 + Sama_1336 0.30 -0.9
1,628,081 + Sama_1336 0.30 -0.3
1,628,081 + Sama_1336 0.30 +0.2
1,628,081 + Sama_1336 0.30 +0.7
1,628,081 + Sama_1336 0.30 +0.2
1,628,081 + Sama_1336 0.30 +0.5
1,628,081 + Sama_1336 0.30 +1.1
1,628,081 + Sama_1336 0.30 -0.9
1,628,081 + Sama_1336 0.30 -1.5
1,628,081 + Sama_1336 0.30 -0.4
1,628,081 + Sama_1336 0.30 -0.8
1,628,081 + Sama_1336 0.30 -0.5
1,628,081 + Sama_1336 0.30 -0.6
1,628,081 + Sama_1336 0.30 +0.0
1,628,081 + Sama_1336 0.30 -0.5
1,628,081 + Sama_1336 0.30 +1.7
1,628,082 - Sama_1336 0.30 -1.6
1,628,082 - Sama_1336 0.30 +0.7
1,628,082 - Sama_1336 0.30 +0.3
1,628,082 - Sama_1336 0.30 +0.0
1,628,082 - Sama_1336 0.30 +1.3
1,628,082 - Sama_1336 0.30 -0.5
1,628,082 - Sama_1336 0.30 +1.0
1,628,082 - Sama_1336 0.30 +0.1
1,628,082 - Sama_1336 0.30 +0.4
1,628,082 - Sama_1336 0.30 +0.1
1,628,082 - Sama_1336 0.30 +0.2
1,628,082 - Sama_1336 0.30 +1.2
1,628,082 - Sama_1336 0.30 -0.5
1,628,159 + Sama_1336 0.33 -1.0
1,628,160 - Sama_1336 0.33 -0.9
1,628,179 + Sama_1336 0.34 +0.0
1,628,180 - Sama_1336 0.34 +0.2
1,628,205 + Sama_1336 0.35 -0.2
1,628,205 + Sama_1336 0.35 -0.8
1,628,205 + Sama_1336 0.35 +0.5
1,628,206 - Sama_1336 0.35 +0.5
1,628,206 - Sama_1336 0.35 +2.3
1,628,206 - Sama_1336 0.35 -0.6
1,628,206 - Sama_1336 0.35 -1.6
1,628,206 - Sama_1336 0.35 +0.4
1,628,206 - Sama_1336 0.35 +1.4
1,628,250 - Sama_1336 0.37 +0.1
1,628,320 - Sama_1336 0.40 +0.1

Or see this region's nucleotide sequence