Strain Fitness in Shewanella amazonensis SB2B around Sama_1094

Experiment: L-Serine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Serine
1,319,288	-		Sama_1092	0.73	-0.5
1,319,294	+		Sama_1092	0.74	-0.3
1,319,362	-		Sama_1092	0.81	-0.9
1,319,371	+		Sama_1092	0.81	-0.1
1,319,429	+		Sama_1092	0.87	-1.3
1,319,429	+		Sama_1092	0.87	+0.2
1,319,429	+		Sama_1092	0.87	-0.3
1,319,429	+		Sama_1092	0.87	-0.6
1,319,430	-		Sama_1092	0.87	+0.9
1,319,430	-		Sama_1092	0.87	-0.7
1,319,430	-		Sama_1092	0.87	+0.8
1,319,430	-		Sama_1092	0.87	+0.1
1,319,435	+		Sama_1092	0.88	-0.2
1,319,435	+		Sama_1092	0.88	-1.2
1,319,435	+		Sama_1092	0.88	-0.0
1,319,435	+		Sama_1092	0.88	-0.5
1,319,435	+		Sama_1092	0.88	+0.8
1,319,435	+		Sama_1092	0.88	-1.5
1,319,435	+		Sama_1092	0.88	+0.8
1,319,435	+		Sama_1092	0.88	-1.0
1,319,435	+		Sama_1092	0.88	+0.9
1,319,435	+		Sama_1092	0.88	-2.1
1,319,435	+		Sama_1092	0.88	-1.6
1,319,436	-		Sama_1092	0.88	+1.2
1,319,436	-		Sama_1092	0.88	-0.2
1,319,436	-		Sama_1092	0.88	+0.0
1,319,436	-		Sama_1092	0.88	+0.6
1,319,436	-		Sama_1092	0.88	-0.9
1,319,436	-		Sama_1092	0.88	-0.1
1,319,436	-		Sama_1092	0.88	+0.1
1,319,436	-		Sama_1092	0.88	-1.3
1,319,436	-		Sama_1092	0.88	+0.3
1,319,439	+		Sama_1092	0.88	+0.1
1,319,439	+		Sama_1092	0.88	-1.0
1,319,439	+		Sama_1092	0.88	+0.0
1,319,439	+		Sama_1092	0.88	+0.2
1,319,439	+		Sama_1092	0.88	+0.2
1,319,439	+		Sama_1092	0.88	-0.3
1,319,440	-		Sama_1092	0.88	+0.2
1,319,448	+		Sama_1092	0.89	-1.8
1,319,479	+				+0.2
1,319,479	+				-0.2
1,319,484	+				-1.0
1,319,485	-				-1.5
1,319,485	-				-0.3
1,319,485	-				-1.0
1,319,485	-				+0.4
1,319,485	-				-0.1
1,319,551	+				+1.2
1,319,551	+				-0.5
1,319,552	-				+0.5
1,319,557	+				-0.8
1,319,558	-				+0.6
1,319,558	-				-0.6
1,319,624	+				+1.0
1,319,631	+		Sama_1093	0.10	+0.0
1,319,635	+		Sama_1093	0.11	+0.4
1,319,635	+		Sama_1093	0.11	+0.2
1,319,635	+		Sama_1093	0.11	-0.2
1,319,635	+		Sama_1093	0.11	+1.8
1,319,636	-		Sama_1093	0.11	+1.8
1,319,636	-		Sama_1093	0.11	+0.0
1,319,694	+		Sama_1093	0.21	+1.8
1,319,752	+		Sama_1093	0.30	-2.4
1,319,752	+		Sama_1093	0.30	+0.1
1,319,753	-		Sama_1093	0.30	+0.7
1,319,753	-		Sama_1093	0.30	-0.8
1,319,762	-		Sama_1093	0.32	-0.3
1,319,773	-		Sama_1093	0.33	-0.6
1,319,820	-		Sama_1093	0.41	-0.1
1,319,973	-		Sama_1093	0.66	+0.2
1,320,039	+		Sama_1093	0.77	-0.5
1,320,039	+		Sama_1093	0.77	+0.8
1,320,039	+		Sama_1093	0.77	-0.5
1,320,039	+		Sama_1093	0.77	+0.4
1,320,040	-		Sama_1093	0.77	+0.2
1,320,040	-		Sama_1093	0.77	+0.8
1,320,099	-		Sama_1093	0.87	+0.2
1,320,180	+				-1.6
1,320,180	+				-0.5
1,320,181	-				-2.1
1,320,181	-				-0.5
1,320,181	-				-0.2
1,320,182	+				-1.0
1,320,183	-				-0.2
1,320,183	-				+0.7
1,320,224	+				-0.3
1,320,230	-				-0.2
1,320,230	-				+1.2
1,320,251	+				+0.0
1,320,303	+				+1.8
1,320,303	+				+1.1
1,320,303	+				-0.5
1,320,303	+				-0.9
1,320,303	+				-0.6
1,320,303	+				-0.2
1,320,303	+				-0.8
1,320,304	-				-0.5
1,320,304	-				-0.3
1,320,304	-				+0.0
1,320,343	+		Sama_1094	0.10	-0.5
1,320,344	-		Sama_1094	0.10	+0.7
1,320,362	+		Sama_1094	0.13	-1.4
1,320,394	+		Sama_1094	0.17	-0.2
1,320,394	+		Sama_1094	0.17	+0.4
1,320,394	+		Sama_1094	0.17	+0.1
1,320,395	-		Sama_1094	0.17	+0.5
1,320,395	-		Sama_1094	0.17	-1.0
1,320,430	-		Sama_1094	0.22	+0.2
1,320,552	+		Sama_1094	0.39	-0.0
1,320,552	+		Sama_1094	0.39	-0.0
1,320,552	+		Sama_1094	0.39	+1.2
1,320,553	-		Sama_1094	0.39	-0.6
1,320,623	+		Sama_1094	0.48	-0.0
1,320,628	+		Sama_1094	0.49	-0.1
1,320,628	+		Sama_1094	0.49	+0.4
1,320,629	-		Sama_1094	0.49	+0.6
1,320,629	-		Sama_1094	0.49	+1.8
1,320,654	+		Sama_1094	0.52	+1.2
1,320,655	-		Sama_1094	0.53	+0.5
1,320,662	-		Sama_1094	0.53	-1.3
1,320,671	+		Sama_1094	0.55	+0.2
1,320,671	+		Sama_1094	0.55	+2.6
1,320,672	-		Sama_1094	0.55	-1.2
1,320,672	-		Sama_1094	0.55	+0.4
1,320,672	-		Sama_1094	0.55	+0.5
1,320,681	-		Sama_1094	0.56	-2.6
1,320,774	+		Sama_1094	0.69	-0.3
1,320,775	-		Sama_1094	0.69	+0.5
1,320,840	+		Sama_1094	0.78	-0.5
1,320,840	+		Sama_1094	0.78	+0.7
1,320,841	-		Sama_1094	0.78	+0.1
1,320,885	+		Sama_1094	0.84	-0.8
1,321,001	+				-0.3
1,321,001	+				+0.2
1,321,002	-				-0.6
1,321,002	-				+1.0
1,321,002	-				+0.4
1,321,034	+				+2.6
1,321,034	+				+1.7
1,321,035	-				+0.4
1,321,035	-				+0.5
1,321,038	+				+2.5
1,321,039	-				+1.3
1,321,089	-		Sama_1095	0.15	+2.5
1,321,089	-		Sama_1095	0.15	+0.8
1,321,112	+		Sama_1095	0.19	+2.3
1,321,112	+		Sama_1095	0.19	+1.6
1,321,112	+		Sama_1095	0.19	+1.7
1,321,112	+		Sama_1095	0.19	+3.4
1,321,112	+		Sama_1095	0.19	+2.7
1,321,113	-		Sama_1095	0.19	+2.8
1,321,113	-		Sama_1095	0.19	+2.7
1,321,113	-		Sama_1095	0.19	+1.6
1,321,113	-		Sama_1095	0.19	+2.2
1,321,117	+		Sama_1095	0.20	+3.3
1,321,117	+		Sama_1095	0.20	+2.6
1,321,118	-		Sama_1095	0.20	+2.2
1,321,118	-		Sama_1095	0.20	+2.6
1,321,142	-		Sama_1095	0.25	+1.8
1,321,227	-		Sama_1095	0.41	+2.4
1,321,240	+		Sama_1095	0.43	+0.8
1,321,241	-		Sama_1095	0.44	+2.6
1,321,242	+		Sama_1095	0.44	+2.9
1,321,243	-		Sama_1095	0.44	+1.8
1,321,243	-		Sama_1095	0.44	-1.3
1,321,260	+		Sama_1095	0.47	+1.6
1,321,260	+		Sama_1095	0.47	+2.0
1,321,261	-		Sama_1095	0.47	+0.0
1,321,261	-		Sama_1095	0.47	+3.1
1,321,261	-		Sama_1095	0.47	+0.8
1,321,330	+		Sama_1095	0.60	+4.0
1,321,342	-		Sama_1095	0.63	+1.2
1,321,394	+		Sama_1095	0.73	+1.6
1,321,394	+		Sama_1095	0.73	+1.2
1,321,395	-		Sama_1095	0.73	+1.8
1,321,395	-		Sama_1095	0.73	+2.2
1,321,395	-		Sama_1095	0.73	+2.1
1,321,428	+		Sama_1095	0.79	+1.9
1,321,445	+		Sama_1095	0.82	+1.5
1,321,476	-		Sama_1095	0.88	-0.8
1,321,504	-				+3.1
1,321,504	-				+1.6
1,321,525	+				+1.9
1,321,525	+				+0.6
1,321,541	+				+0.7
1,321,541	+				+1.8
1,321,542	-				+0.6
1,321,552	+				-0.1
1,321,563	+				-0.9
1,321,564	-				-0.3
1,321,564	-				-1.0
1,321,579	+				+0.8
1,321,580	-				-0.2
1,321,637	+				-0.1
1,321,637	+				+0.2
1,321,663	-				-1.6
1,321,715	+				-0.2
1,321,716	-				+0.6
1,321,735	+				+1.8
1,321,735	+				+0.0
1,321,736	-				+1.0
1,321,736	-				-0.9
1,321,736	-				+0.1
1,321,741	-				+0.5
1,321,745	-				+0.7
1,321,770	+				-0.3
1,321,798	+				+0.0
1,321,798	+				-0.1
1,321,798	+				-0.1
1,321,900	+		Sama_1096	0.19	+1.8
1,321,900	+		Sama_1096	0.19	+0.2
1,321,900	+		Sama_1096	0.19	+0.1
1,321,901	-		Sama_1096	0.19	-1.9
1,321,935	-		Sama_1096	0.25	-0.5
1,321,976	+		Sama_1096	0.31	-1.2
1,321,976	+		Sama_1096	0.31	+0.2
1,321,976	+		Sama_1096	0.31	-1.7
1,321,976	+		Sama_1096	0.31	-0.9
1,321,976	+		Sama_1096	0.31	+0.7
1,321,977	-		Sama_1096	0.32	+0.1
1,321,977	-		Sama_1096	0.32	-0.2
1,321,977	-		Sama_1096	0.32	+0.2
1,321,977	-		Sama_1096	0.32	+1.0
1,321,977	-		Sama_1096	0.32	+1.4