Experiment: L-Serine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0388 and Sama_0389 are separated by 72 nucleotides Sama_0389 and Sama_0390 are separated by 68 nucleotides Sama_0390 and Sama_0391 are separated by 656 nucleotides
Sama_0388: Sama_0388 - putative diguanylate phosphodiesterase (RefSeq), at 480,564 to 483,077
_0388
Sama_0389: Sama_0389 - short chain dehydrogenase (RefSeq), at 483,150 to 483,962
_0389
Sama_0390: Sama_0390 - hypothetical protein (RefSeq), at 484,031 to 484,270
_0390
Sama_0391: Sama_0391 - hypothetical protein (RefSeq), at 484,927 to 485,916
_0391
Position (kb) 483
484 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 482.156 kb on + strand, within Sama_0388 at 482.165 kb on - strand, within Sama_0388 at 482.219 kb on + strand, within Sama_0388 at 482.269 kb on - strand, within Sama_0388 at 482.269 kb on - strand, within Sama_0388 at 482.269 kb on - strand, within Sama_0388 at 482.295 kb on + strand, within Sama_0388 at 482.303 kb on + strand, within Sama_0388 at 482.303 kb on + strand, within Sama_0388 at 482.303 kb on + strand, within Sama_0388 at 482.304 kb on - strand, within Sama_0388 at 482.304 kb on - strand, within Sama_0388 at 482.327 kb on + strand, within Sama_0388 at 482.328 kb on - strand, within Sama_0388 at 482.328 kb on - strand, within Sama_0388 at 482.364 kb on + strand, within Sama_0388 at 482.365 kb on - strand, within Sama_0388 at 482.377 kb on + strand, within Sama_0388 at 482.378 kb on - strand, within Sama_0388 at 482.378 kb on - strand, within Sama_0388 at 482.378 kb on - strand, within Sama_0388 at 482.378 kb on - strand, within Sama_0388 at 482.471 kb on + strand, within Sama_0388 at 482.472 kb on - strand, within Sama_0388 at 482.472 kb on - strand, within Sama_0388 at 482.492 kb on + strand, within Sama_0388 at 482.493 kb on - strand, within Sama_0388 at 482.493 kb on - strand, within Sama_0388 at 482.493 kb on - strand, within Sama_0388 at 482.604 kb on - strand, within Sama_0388 at 482.604 kb on - strand, within Sama_0388 at 482.604 kb on - strand, within Sama_0388 at 482.633 kb on + strand, within Sama_0388 at 482.634 kb on - strand, within Sama_0388 at 482.675 kb on + strand, within Sama_0388 at 482.675 kb on + strand, within Sama_0388 at 482.675 kb on + strand, within Sama_0388 at 482.675 kb on + strand, within Sama_0388 at 482.675 kb on + strand, within Sama_0388 at 482.676 kb on - strand, within Sama_0388 at 482.676 kb on - strand, within Sama_0388 at 482.772 kb on - strand, within Sama_0388 at 482.802 kb on + strand, within Sama_0388 at 482.802 kb on + strand, within Sama_0388 at 482.803 kb on - strand, within Sama_0388 at 482.803 kb on - strand, within Sama_0388 at 482.803 kb on - strand, within Sama_0388 at 482.803 kb on - strand, within Sama_0388 at 482.803 kb on + strand, within Sama_0388 at 482.803 kb on - strand, within Sama_0388 at 482.803 kb on - strand, within Sama_0388 at 482.808 kb on + strand, within Sama_0388 at 482.832 kb on + strand at 482.832 kb on + strand at 482.833 kb on - strand at 482.886 kb on + strand at 482.887 kb on - strand at 482.903 kb on + strand at 482.904 kb on - strand at 482.904 kb on - strand at 482.932 kb on + strand at 482.932 kb on + strand at 482.932 kb on + strand at 483.000 kb on + strand at 483.001 kb on - strand at 483.012 kb on + strand at 483.108 kb on + strand at 483.149 kb on + strand at 483.149 kb on + strand at 483.150 kb on - strand at 483.200 kb on + strand at 483.201 kb on - strand at 483.350 kb on + strand, within Sama_0389 at 483.350 kb on + strand, within Sama_0389 at 483.351 kb on - strand, within Sama_0389 at 483.390 kb on - strand, within Sama_0389 at 483.413 kb on + strand, within Sama_0389 at 483.413 kb on + strand, within Sama_0389 at 483.413 kb on + strand, within Sama_0389 at 483.413 kb on + strand, within Sama_0389 at 483.413 kb on + strand, within Sama_0389 at 483.414 kb on - strand, within Sama_0389 at 483.434 kb on + strand, within Sama_0389 at 483.435 kb on - strand, within Sama_0389 at 483.500 kb on + strand, within Sama_0389 at 483.500 kb on + strand, within Sama_0389 at 483.501 kb on - strand, within Sama_0389 at 483.501 kb on - strand, within Sama_0389 at 483.504 kb on + strand, within Sama_0389 at 483.504 kb on + strand, within Sama_0389 at 483.504 kb on + strand, within Sama_0389 at 483.569 kb on - strand, within Sama_0389 at 483.621 kb on + strand, within Sama_0389 at 483.799 kb on + strand, within Sama_0389 at 483.799 kb on + strand, within Sama_0389 at 483.799 kb on + strand, within Sama_0389 at 483.800 kb on - strand, within Sama_0389 at 483.800 kb on - strand, within Sama_0389 at 483.800 kb on - strand, within Sama_0389 at 483.800 kb on - strand, within Sama_0389 at 483.800 kb on - strand, within Sama_0389 at 483.800 kb on - strand, within Sama_0389 at 483.859 kb on + strand, within Sama_0389 at 483.863 kb on + strand, within Sama_0389 at 483.863 kb on + strand, within Sama_0389 at 483.863 kb on + strand, within Sama_0389 at 483.863 kb on + strand, within Sama_0389 at 483.863 kb on + strand, within Sama_0389 at 483.863 kb on + strand, within Sama_0389 at 483.863 kb on + strand, within Sama_0389 at 483.863 kb on + strand, within Sama_0389 at 483.863 kb on + strand, within Sama_0389 at 483.863 kb on + strand, within Sama_0389 at 483.863 kb on + strand, within Sama_0389 at 483.863 kb on + strand, within Sama_0389 at 483.864 kb on - strand, within Sama_0389 at 483.864 kb on - strand, within Sama_0389 at 483.864 kb on - strand, within Sama_0389 at 483.864 kb on - strand, within Sama_0389 at 483.864 kb on - strand, within Sama_0389 at 483.864 kb on - strand, within Sama_0389 at 483.864 kb on - strand, within Sama_0389 at 483.864 kb on - strand, within Sama_0389 at 483.864 kb on - strand, within Sama_0389 at 483.864 kb on - strand, within Sama_0389 at 483.864 kb on - strand, within Sama_0389 at 483.864 kb on - strand, within Sama_0389 at 483.864 kb on - strand, within Sama_0389 at 483.864 kb on - strand, within Sama_0389 at 483.864 kb on - strand, within Sama_0389 at 483.864 kb on - strand, within Sama_0389 at 483.866 kb on + strand, within Sama_0389 at 483.866 kb on + strand, within Sama_0389 at 483.866 kb on + strand, within Sama_0389 at 483.866 kb on + strand, within Sama_0389 at 483.867 kb on - strand, within Sama_0389 at 483.867 kb on - strand, within Sama_0389 at 483.867 kb on - strand, within Sama_0389 at 483.867 kb on - strand, within Sama_0389 at 483.867 kb on - strand, within Sama_0389 at 483.867 kb on - strand, within Sama_0389 at 483.867 kb on - strand, within Sama_0389 at 483.867 kb on - strand, within Sama_0389 at 483.867 kb on - strand, within Sama_0389 at 483.922 kb on + strand at 483.922 kb on + strand at 483.922 kb on + strand at 483.923 kb on - strand at 483.926 kb on + strand at 483.926 kb on + strand at 483.926 kb on + strand at 483.926 kb on + strand at 483.926 kb on + strand at 483.926 kb on + strand at 483.927 kb on - strand at 483.927 kb on - strand at 483.927 kb on - strand at 483.927 kb on - strand at 483.927 kb on - strand at 483.927 kb on - strand at 483.927 kb on - strand at 483.927 kb on - strand at 483.927 kb on - strand at 483.927 kb on - strand at 483.927 kb on - strand at 483.979 kb on - strand at 483.979 kb on - strand at 484.221 kb on + strand, within Sama_0390 at 484.235 kb on + strand, within Sama_0390 at 484.236 kb on - strand, within Sama_0390 at 484.237 kb on + strand, within Sama_0390 at 484.238 kb on - strand, within Sama_0390 at 484.238 kb on - strand, within Sama_0390 at 484.277 kb on + strand at 484.278 kb on - strand at 484.278 kb on - strand at 484.278 kb on - strand at 484.278 kb on - strand at 484.281 kb on + strand at 484.281 kb on + strand at 484.281 kb on + strand at 484.282 kb on - strand at 484.282 kb on - strand at 484.302 kb on - strand at 484.302 kb on - strand at 484.302 kb on - strand at 484.313 kb on + strand at 484.313 kb on + strand at 484.313 kb on + strand at 484.313 kb on + strand at 484.314 kb on - strand at 484.314 kb on - strand at 484.314 kb on - strand at 484.322 kb on + strand at 484.322 kb on + strand at 484.323 kb on - strand at 484.323 kb on - strand at 484.395 kb on - strand at 484.406 kb on + strand at 484.416 kb on + strand at 484.417 kb on - strand at 484.438 kb on - strand at 484.438 kb on - strand at 484.476 kb on - strand at 484.544 kb on - strand at 484.625 kb on - strand at 484.631 kb on + strand at 484.632 kb on - strand at 484.642 kb on - strand at 484.669 kb on - strand at 484.669 kb on - strand at 484.719 kb on + strand at 484.725 kb on + strand at 484.734 kb on + strand at 484.735 kb on - strand at 484.778 kb on - strand at 484.779 kb on + strand at 484.780 kb on - strand at 484.785 kb on + strand at 484.790 kb on + strand at 484.790 kb on + strand at 484.790 kb on + strand at 484.792 kb on + strand at 484.792 kb on + strand at 484.792 kb on + strand at 484.793 kb on - strand at 484.793 kb on - strand at 484.802 kb on + strand at 484.808 kb on + strand at 484.959 kb on + strand at 484.960 kb on - strand at 484.962 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine remove 482,156 + Sama_0388 0.63 +1.8 482,165 - Sama_0388 0.64 -1.3 482,219 + Sama_0388 0.66 +3.3 482,269 - Sama_0388 0.68 -0.0 482,269 - Sama_0388 0.68 -0.5 482,269 - Sama_0388 0.68 -0.1 482,295 + Sama_0388 0.69 +1.0 482,303 + Sama_0388 0.69 -0.2 482,303 + Sama_0388 0.69 -0.9 482,303 + Sama_0388 0.69 -0.6 482,304 - Sama_0388 0.69 -0.1 482,304 - Sama_0388 0.69 +0.1 482,327 + Sama_0388 0.70 +0.3 482,328 - Sama_0388 0.70 -0.3 482,328 - Sama_0388 0.70 +1.5 482,364 + Sama_0388 0.72 -0.9 482,365 - Sama_0388 0.72 -0.8 482,377 + Sama_0388 0.72 +0.3 482,378 - Sama_0388 0.72 +0.5 482,378 - Sama_0388 0.72 -0.1 482,378 - Sama_0388 0.72 -1.6 482,378 - Sama_0388 0.72 +0.8 482,471 + Sama_0388 0.76 +0.3 482,472 - Sama_0388 0.76 -1.0 482,472 - Sama_0388 0.76 +1.0 482,492 + Sama_0388 0.77 -0.6 482,493 - Sama_0388 0.77 -0.8 482,493 - Sama_0388 0.77 +0.6 482,493 - Sama_0388 0.77 -0.9 482,604 - Sama_0388 0.81 +0.8 482,604 - Sama_0388 0.81 +0.4 482,604 - Sama_0388 0.81 +1.1 482,633 + Sama_0388 0.82 +0.3 482,634 - Sama_0388 0.82 -0.3 482,675 + Sama_0388 0.84 +0.3 482,675 + Sama_0388 0.84 +0.8 482,675 + Sama_0388 0.84 -0.6 482,675 + Sama_0388 0.84 -0.6 482,675 + Sama_0388 0.84 -0.6 482,676 - Sama_0388 0.84 -0.8 482,676 - Sama_0388 0.84 -1.6 482,772 - Sama_0388 0.88 -0.9 482,802 + Sama_0388 0.89 +1.8 482,802 + Sama_0388 0.89 -0.5 482,803 - Sama_0388 0.89 -1.2 482,803 - Sama_0388 0.89 -0.4 482,803 - Sama_0388 0.89 -1.4 482,803 - Sama_0388 0.89 +0.4 482,803 + Sama_0388 0.89 +0.9 482,803 - Sama_0388 0.89 -0.2 482,803 - Sama_0388 0.89 +0.6 482,808 + Sama_0388 0.89 +1.3 482,832 + -0.6 482,832 + -0.5 482,833 - +0.3 482,886 + -0.2 482,887 - +2.1 482,903 + -2.6 482,904 - -0.6 482,904 - -0.7 482,932 + -0.6 482,932 + -0.5 482,932 + -0.3 483,000 + +0.9 483,001 - +0.5 483,012 + -0.0 483,108 + +0.7 483,149 + -0.6 483,149 + -1.2 483,150 - -0.7 483,200 + +1.3 483,201 - +0.4 483,350 + Sama_0389 0.25 +0.7 483,350 + Sama_0389 0.25 -0.6 483,351 - Sama_0389 0.25 +0.4 483,390 - Sama_0389 0.30 +0.7 483,413 + Sama_0389 0.32 -0.9 483,413 + Sama_0389 0.32 +0.2 483,413 + Sama_0389 0.32 +0.6 483,413 + Sama_0389 0.32 +2.3 483,413 + Sama_0389 0.32 -0.6 483,414 - Sama_0389 0.32 +0.8 483,434 + Sama_0389 0.35 -1.6 483,435 - Sama_0389 0.35 -0.6 483,500 + Sama_0389 0.43 -0.9 483,500 + Sama_0389 0.43 -0.2 483,501 - Sama_0389 0.43 -0.6 483,501 - Sama_0389 0.43 +0.8 483,504 + Sama_0389 0.44 +0.8 483,504 + Sama_0389 0.44 -0.2 483,504 + Sama_0389 0.44 -1.1 483,569 - Sama_0389 0.52 +0.1 483,621 + Sama_0389 0.58 -0.3 483,799 + Sama_0389 0.80 -0.0 483,799 + Sama_0389 0.80 -0.7 483,799 + Sama_0389 0.80 +1.3 483,800 - Sama_0389 0.80 +0.3 483,800 - Sama_0389 0.80 +0.8 483,800 - Sama_0389 0.80 +0.1 483,800 - Sama_0389 0.80 +0.2 483,800 - Sama_0389 0.80 +0.3 483,800 - Sama_0389 0.80 +0.8 483,859 + Sama_0389 0.87 -0.1 483,863 + Sama_0389 0.88 +0.4 483,863 + Sama_0389 0.88 -1.1 483,863 + Sama_0389 0.88 +0.7 483,863 + Sama_0389 0.88 +0.1 483,863 + Sama_0389 0.88 -0.1 483,863 + Sama_0389 0.88 -0.1 483,863 + Sama_0389 0.88 +0.1 483,863 + Sama_0389 0.88 -0.6 483,863 + Sama_0389 0.88 +0.6 483,863 + Sama_0389 0.88 +0.1 483,863 + Sama_0389 0.88 -0.8 483,863 + Sama_0389 0.88 +2.1 483,864 - Sama_0389 0.88 -1.1 483,864 - Sama_0389 0.88 -1.1 483,864 - Sama_0389 0.88 +0.4 483,864 - Sama_0389 0.88 +0.4 483,864 - Sama_0389 0.88 +0.1 483,864 - Sama_0389 0.88 +0.2 483,864 - Sama_0389 0.88 -0.3 483,864 - Sama_0389 0.88 -1.7 483,864 - Sama_0389 0.88 -0.1 483,864 - Sama_0389 0.88 -0.3 483,864 - Sama_0389 0.88 -1.4 483,864 - Sama_0389 0.88 +0.0 483,864 - Sama_0389 0.88 -0.4 483,864 - Sama_0389 0.88 +1.3 483,864 - Sama_0389 0.88 -1.1 483,864 - Sama_0389 0.88 +0.8 483,866 + Sama_0389 0.88 -0.1 483,866 + Sama_0389 0.88 +0.1 483,866 + Sama_0389 0.88 +0.7 483,866 + Sama_0389 0.88 -0.1 483,867 - Sama_0389 0.88 +0.7 483,867 - Sama_0389 0.88 +1.0 483,867 - Sama_0389 0.88 +0.3 483,867 - Sama_0389 0.88 +0.4 483,867 - Sama_0389 0.88 +0.7 483,867 - Sama_0389 0.88 -1.6 483,867 - Sama_0389 0.88 -0.1 483,867 - Sama_0389 0.88 +1.1 483,867 - Sama_0389 0.88 +0.9 483,922 + -0.1 483,922 + -0.6 483,922 + -0.4 483,923 - -0.8 483,926 + +0.4 483,926 + -0.5 483,926 + +0.3 483,926 + +0.7 483,926 + -1.7 483,926 + -0.4 483,927 - -1.3 483,927 - +1.0 483,927 - +1.4 483,927 - +0.3 483,927 - +0.8 483,927 - -1.1 483,927 - +1.3 483,927 - +0.7 483,927 - +0.9 483,927 - +0.7 483,927 - +0.3 483,979 - +0.3 483,979 - -0.2 484,221 + Sama_0390 0.79 -0.4 484,235 + Sama_0390 0.85 +0.9 484,236 - Sama_0390 0.85 -0.3 484,237 + Sama_0390 0.86 +2.0 484,238 - Sama_0390 0.86 +0.1 484,238 - Sama_0390 0.86 +1.1 484,277 + -0.3 484,278 - +0.4 484,278 - +0.7 484,278 - -0.8 484,278 - -0.1 484,281 + +1.3 484,281 + -0.3 484,281 + -1.1 484,282 - +0.0 484,282 - +0.8 484,302 - -0.3 484,302 - +0.8 484,302 - +0.6 484,313 + -0.1 484,313 + +0.2 484,313 + -0.6 484,313 + +0.3 484,314 - -0.1 484,314 - +0.6 484,314 - -0.6 484,322 + +0.3 484,322 + -2.0 484,323 - +0.7 484,323 - +1.7 484,395 - +2.8 484,406 + +0.3 484,416 + +0.3 484,417 - +0.5 484,438 - -1.4 484,438 - +0.2 484,476 - -1.1 484,544 - -0.2 484,625 - +0.4 484,631 + +0.8 484,632 - -0.6 484,642 - -1.2 484,669 - +0.8 484,669 - -1.2 484,719 + +0.1 484,725 + -0.2 484,734 + -2.0 484,735 - +0.9 484,778 - +1.2 484,779 + +1.3 484,780 - +0.3 484,785 + +0.3 484,790 + +1.3 484,790 + +1.1 484,790 + +0.7 484,792 + +0.4 484,792 + +0.2 484,792 + +1.5 484,793 - +0.0 484,793 - +2.3 484,802 + +1.3 484,808 + +0.8 484,959 + +0.7 484,960 - +0.1 484,962 + -0.6
Or see this region's nucleotide sequence