Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2235 and Shew_2236 are separated by 384 nucleotides Shew_2236 and Shew_2237 are separated by 120 nucleotides Shew_2237 and Shew_2238 are separated by 94 nucleotides Shew_2238 and Shew_2239 are separated by 102 nucleotides
Shew_2235: Shew_2235 - DNA polymerase III, subunits gamma and tau (RefSeq), at 2,611,845 to 2,615,186
_2235
Shew_2236: Shew_2236 - adenine phosphoribosyltransferase (RefSeq), at 2,615,571 to 2,616,164
_2236
Shew_2237: Shew_2237 - hypothetical protein (RefSeq), at 2,616,285 to 2,616,653
_2237
Shew_2238: Shew_2238 - hypothetical protein (RefSeq), at 2,616,748 to 2,616,870
_2238
Shew_2239: Shew_2239 - hypothetical protein (RefSeq), at 2,616,973 to 2,617,716
_2239
Position (kb)
2615
2616
2617 Strain fitness (log2 ratio)
-1
0
1 at 2615.357 kb on - strand at 2615.360 kb on + strand at 2615.383 kb on - strand at 2615.650 kb on - strand, within Shew_2236 at 2615.796 kb on + strand, within Shew_2236 at 2615.930 kb on + strand, within Shew_2236 at 2616.206 kb on + strand at 2616.386 kb on - strand, within Shew_2237 at 2616.452 kb on + strand, within Shew_2237 at 2616.872 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,615,357 - +0.0 2,615,360 + -0.2 2,615,383 - -0.6 2,615,650 - Shew_2236 0.13 +1.3 2,615,796 + Shew_2236 0.38 +0.1 2,615,930 + Shew_2236 0.60 +1.2 2,616,206 + -0.0 2,616,386 - Shew_2237 0.27 +0.0 2,616,452 + Shew_2237 0.45 -0.3 2,616,872 - +0.3
Or see this region's nucleotide sequence