Strain Fitness in Shewanella loihica PV-4 around Shew_2234

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShew_2232 and Shew_2233 are separated by 155 nucleotidesShew_2233 and Shew_2234 are separated by 2 nucleotidesShew_2234 and Shew_2235 are separated by 222 nucleotides Shew_2232: Shew_2232 - heat shock protein 90 (RefSeq), at 2,608,616 to 2,610,535 _2232 Shew_2233: Shew_2233 - recombination protein RecR (RefSeq), at 2,610,691 to 2,611,290 _2233 Shew_2234: Shew_2234 - hypothetical protein (RefSeq), at 2,611,293 to 2,611,622 _2234 Shew_2235: Shew_2235 - DNA polymerase III, subunits gamma and tau (RefSeq), at 2,611,845 to 2,615,186 _2235 Position (kb) 2611 2612Strain fitness (log2 ratio) -2 -1 0 1at 2610.772 kb on - strand, within Shew_2233

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
2,610,772 - Shew_2233 0.14 -2.5

Or see this region's nucleotide sequence