Strain Fitness in Shewanella loihica PV-4 around Shew_1283

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1281 and Shew_1282 are separated by 617 nucleotidesShew_1282 and Shew_1283 are separated by 127 nucleotidesShew_1283 and Shew_1284 are separated by 263 nucleotidesShew_1284 and Shew_1285 are separated by 141 nucleotides Shew_1281: Shew_1281 - hypothetical protein (RefSeq), at 1,481,125 to 1,481,868 _1281 Shew_1282: Shew_1282 - hypothetical protein (RefSeq), at 1,482,486 to 1,482,710 _1282 Shew_1283: Shew_1283 - NrfJ-related protein (RefSeq), at 1,482,838 to 1,483,140 _1283 Shew_1284: Shew_1284 - GCN5-related N-acetyltransferase (RefSeq), at 1,483,404 to 1,483,904 _1284 Shew_1285: Shew_1285 - 5'-nucleotidase (RefSeq), at 1,484,046 to 1,485,806 _1285 Position (kb) 1482 1483 1484Strain fitness (log2 ratio) -1 0 1 2at 1482.082 kb on + strandat 1482.464 kb on - strandat 1482.648 kb on + strand, within Shew_1282at 1482.817 kb on - strandat 1483.173 kb on + strandat 1483.376 kb on + strandat 1483.453 kb on - strandat 1483.503 kb on + strand, within Shew_1284at 1483.557 kb on + strand, within Shew_1284at 1483.574 kb on + strand, within Shew_1284at 1483.786 kb on + strand, within Shew_1284at 1483.796 kb on + strand, within Shew_1284at 1483.906 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,482,082 + +0.2
1,482,464 - -0.1
1,482,648 + Shew_1282 0.72 +0.4
1,482,817 - +1.1
1,483,173 + +0.0
1,483,376 + +0.0
1,483,453 - +1.8
1,483,503 + Shew_1284 0.20 +0.5
1,483,557 + Shew_1284 0.31 +0.8
1,483,574 + Shew_1284 0.34 -0.6
1,483,786 + Shew_1284 0.76 +0.2
1,483,796 + Shew_1284 0.78 -0.2
1,483,906 - +0.8

Or see this region's nucleotide sequence