Strain Fitness in Shewanella loihica PV-4 around Shew_0902

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0901 and Shew_0902 overlap by 4 nucleotidesShew_0902 and Shew_0903 are separated by 182 nucleotides Shew_0901: Shew_0901 - transketolase, central region (RefSeq), at 1,021,390 to 1,023,681 _0901 Shew_0902: Shew_0902 - (acyl-carrier-protein) S-malonyltransferase (RefSeq), at 1,023,678 to 1,024,772 _0902 Shew_0903: Shew_0903 - GCN5-related N-acetyltransferase (RefSeq), at 1,024,955 to 1,025,476 _0903 Position (kb) 1023 1024 1025Strain fitness (log2 ratio) -2 -1 0 1at 1023.197 kb on - strand, within Shew_0901at 1023.580 kb on + strandat 1023.673 kb on + strandat 1023.944 kb on + strand, within Shew_0902at 1024.177 kb on - strand, within Shew_0902at 1024.251 kb on - strand, within Shew_0902at 1024.524 kb on - strand, within Shew_0902at 1024.685 kb on + strandat 1024.774 kb on - strandat 1024.811 kb on + strandat 1024.844 kb on + strandat 1025.005 kb on + strandat 1025.051 kb on - strand, within Shew_0903at 1025.146 kb on + strand, within Shew_0903at 1025.202 kb on - strand, within Shew_0903at 1025.287 kb on - strand, within Shew_0903at 1025.652 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,023,197 - Shew_0901 0.79 +0.3
1,023,580 + +0.2
1,023,673 + +1.4
1,023,944 + Shew_0902 0.24 -0.6
1,024,177 - Shew_0902 0.46 -0.5
1,024,251 - Shew_0902 0.52 -0.7
1,024,524 - Shew_0902 0.77 -0.4
1,024,685 + +0.3
1,024,774 - +0.3
1,024,811 + +0.4
1,024,844 + +1.0
1,025,005 + -1.1
1,025,051 - Shew_0903 0.18 +0.3
1,025,146 + Shew_0903 0.37 +0.1
1,025,202 - Shew_0903 0.47 -0.2
1,025,287 - Shew_0903 0.64 -2.1
1,025,652 - -0.1

Or see this region's nucleotide sequence