Strain Fitness in Shewanella loihica PV-4 around Shew_0693

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShew_0692 and Shew_0693 are separated by 107 nucleotidesShew_0693 and Shew_0694 overlap by 4 nucleotides Shew_0692: Shew_0692 - hypothetical protein (RefSeq), at 786,199 to 787,119 _0692 Shew_0693: Shew_0693 - hypothetical protein (RefSeq), at 787,227 to 787,514 _0693 Shew_0694: Shew_0694 - hypothetical protein (RefSeq), at 787,511 to 788,452 _0694 Position (kb) 787 788Strain fitness (log2 ratio) -1 0 1at 786.504 kb on - strand, within Shew_0692at 786.596 kb on - strand, within Shew_0692at 786.755 kb on + strand, within Shew_0692at 786.897 kb on + strand, within Shew_0692at 787.174 kb on + strandat 787.475 kb on + strand, within Shew_0693at 787.516 kb on - strandat 787.589 kb on + strandat 787.717 kb on - strand, within Shew_0694at 787.765 kb on + strand, within Shew_0694at 787.940 kb on - strand, within Shew_0694at 788.002 kb on + strand, within Shew_0694at 788.222 kb on - strand, within Shew_0694at 788.342 kb on + strand, within Shew_0694at 788.342 kb on + strand, within Shew_0694at 788.432 kb on + strandat 788.452 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
786,504 - Shew_0692 0.33 -1.3
786,596 - Shew_0692 0.43 +0.5
786,755 + Shew_0692 0.60 +0.1
786,897 + Shew_0692 0.76 -0.2
787,174 + +0.4
787,475 + Shew_0693 0.86 -0.1
787,516 - +0.3
787,589 + +0.7
787,717 - Shew_0694 0.22 +0.7
787,765 + Shew_0694 0.27 +0.6
787,940 - Shew_0694 0.46 -0.4
788,002 + Shew_0694 0.52 +0.1
788,222 - Shew_0694 0.75 +0.0
788,342 + Shew_0694 0.88 -0.2
788,342 + Shew_0694 0.88 +0.9
788,432 + -0.4
788,452 + -0.1

Or see this region's nucleotide sequence