Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0638 and Shew_0639 are separated by 78 nucleotides Shew_0639 and Shew_0640 are separated by 32 nucleotides Shew_0640 and Shew_0641 overlap by 13 nucleotides Shew_0641 and Shew_0642 are separated by 1 nucleotides
Shew_0638: Shew_0638 - cell surface receptor IPT/TIG domain-containing protein (RefSeq), at 724,655 to 728,878
_0638
Shew_0639: Shew_0639 - hypothetical protein (RefSeq), at 728,957 to 729,604
_0639
Shew_0640: Shew_0640 - TPR repeat-containing protein (RefSeq), at 729,637 to 730,119
_0640
Shew_0641: Shew_0641 - hypothetical protein (RefSeq), at 730,107 to 730,451
_0641
Shew_0642: Shew_0642 - type II secretion system protein (RefSeq), at 730,453 to 731,316
_0642
Position (kb) 729
730
731 Strain fitness (log2 ratio) -1
0
1
2 at 728.820 kb on + strand at 728.828 kb on + strand at 729.145 kb on + strand, within Shew_0639 at 729.365 kb on + strand, within Shew_0639 at 729.373 kb on - strand, within Shew_0639 at 729.373 kb on - strand, within Shew_0639 at 729.373 kb on - strand, within Shew_0639 at 729.373 kb on - strand, within Shew_0639 at 729.373 kb on - strand, within Shew_0639 at 729.465 kb on - strand, within Shew_0639 at 729.470 kb on + strand, within Shew_0639 at 729.504 kb on - strand, within Shew_0639 at 729.792 kb on - strand, within Shew_0640 at 730.289 kb on + strand, within Shew_0641 at 730.289 kb on + strand, within Shew_0641 at 730.374 kb on - strand, within Shew_0641 at 730.605 kb on - strand, within Shew_0642 at 730.605 kb on - strand, within Shew_0642 at 730.839 kb on - strand, within Shew_0642 at 730.983 kb on + strand, within Shew_0642 at 731.052 kb on + strand, within Shew_0642
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 728,820 + +2.3 728,828 + -0.3 729,145 + Shew_0639 0.29 +0.0 729,365 + Shew_0639 0.63 -0.0 729,373 - Shew_0639 0.64 +0.9 729,373 - Shew_0639 0.64 -0.0 729,373 - Shew_0639 0.64 -0.2 729,373 - Shew_0639 0.64 -0.3 729,373 - Shew_0639 0.64 -0.9 729,465 - Shew_0639 0.78 -0.4 729,470 + Shew_0639 0.79 -0.3 729,504 - Shew_0639 0.84 -0.4 729,792 - Shew_0640 0.32 -0.9 730,289 + Shew_0641 0.53 -0.6 730,289 + Shew_0641 0.53 +0.3 730,374 - Shew_0641 0.77 +0.3 730,605 - Shew_0642 0.18 +0.1 730,605 - Shew_0642 0.18 -0.1 730,839 - Shew_0642 0.45 -0.4 730,983 + Shew_0642 0.61 -0.1 731,052 + Shew_0642 0.69 +0.0
Or see this region's nucleotide sequence