Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_4221

Experiment: m.b. Fusidic 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_4220 and Dshi_4221 are separated by 1 nucleotidesDshi_4221 and Dshi_4222 are separated by 84 nucleotidesDshi_4222 and Dshi_4223 are separated by 72 nucleotides Dshi_4220: Dshi_4220 - protein of unknown function DUF112 transmembrane (RefSeq), at 67,749 to 69,233 _4220 Dshi_4221: Dshi_4221 - 2-hydroxy-3-oxopropionate reductase (RefSeq), at 69,235 to 70,116 _4221 Dshi_4222: Dshi_4222 - hypothetical protein (RefSeq), at 70,201 to 70,617 _4222 Dshi_4223: Dshi_4223 - Ferritin Dps family protein (RefSeq), at 70,690 to 71,160 _4223 Position (kb) 69 70 71Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 68.237 kb on - strand, within Dshi_4220at 68.245 kb on - strand, within Dshi_4220at 68.498 kb on - strand, within Dshi_4220at 68.596 kb on + strand, within Dshi_4220at 68.748 kb on + strand, within Dshi_4220at 68.919 kb on - strand, within Dshi_4220at 68.944 kb on + strand, within Dshi_4220at 69.021 kb on - strand, within Dshi_4220at 69.066 kb on + strand, within Dshi_4220at 69.162 kb on + strandat 69.162 kb on + strandat 69.242 kb on - strandat 69.357 kb on + strand, within Dshi_4221at 69.528 kb on + strand, within Dshi_4221at 69.623 kb on - strand, within Dshi_4221at 69.728 kb on + strandat 69.865 kb on - strand, within Dshi_4221at 70.014 kb on + strand, within Dshi_4221at 70.014 kb on + strand, within Dshi_4221at 70.224 kb on - strandat 70.283 kb on - strandat 70.283 kb on - strand, within Dshi_4222at 70.416 kb on + strand, within Dshi_4222at 70.591 kb on + strandat 70.713 kb on + strandat 70.880 kb on + strand, within Dshi_4223

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml
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68,237 - Dshi_4220 0.33 -0.2
68,245 - Dshi_4220 0.33 -2.7
68,498 - Dshi_4220 0.50 -2.2
68,596 + Dshi_4220 0.57 +0.8
68,748 + Dshi_4220 0.67 +0.8
68,919 - Dshi_4220 0.79 -2.2
68,944 + Dshi_4220 0.80 +1.6
69,021 - Dshi_4220 0.86 -1.7
69,066 + Dshi_4220 0.89 -2.3
69,162 + +0.4
69,162 + +2.4
69,242 - -3.2
69,357 + Dshi_4221 0.14 -1.7
69,528 + Dshi_4221 0.33 -0.2
69,623 - Dshi_4221 0.44 -1.2
69,728 + +0.8
69,865 - Dshi_4221 0.71 +0.8
70,014 + Dshi_4221 0.88 -1.6
70,014 + Dshi_4221 0.88 -1.2
70,224 - +1.8
70,283 - +2.4
70,283 - Dshi_4222 0.20 -2.5
70,416 + Dshi_4222 0.52 -2.0
70,591 + -0.7
70,713 + -1.9
70,880 + Dshi_4223 0.40 -1.7

Or see this region's nucleotide sequence