Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_4157 and Dshi_4158 are separated by 78 nucleotides Dshi_4158 and Dshi_4159 are separated by 121 nucleotides Dshi_4159 and Dshi_4160 are separated by 54 nucleotides
Dshi_4157: Dshi_4157 - monooxygenase protein, putative (RefSeq), at 3,833 to 5,632
_4157
Dshi_4158: Dshi_4158 - acetoin reductase (RefSeq), at 5,711 to 6,484
_4158
Dshi_4159: Dshi_4159 - Alcohol dehydrogenase GroES domain protein (RefSeq), at 6,606 to 7,658
_4159
Dshi_4160: Dshi_4160 - light-dependent protochlorophyllide reductase (RefSeq), at 7,713 to 8,699
_4160
Position (kb)
6
7
8 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 5.722 kb on + strand at 5.722 kb on + strand at 5.730 kb on - strand at 5.934 kb on + strand, within Dshi_4158 at 6.023 kb on + strand, within Dshi_4158 at 6.064 kb on - strand, within Dshi_4158 at 6.330 kb on - strand, within Dshi_4158 at 6.571 kb on - strand at 6.586 kb on + strand at 6.689 kb on + strand at 7.129 kb on + strand, within Dshi_4159 at 7.147 kb on - strand, within Dshi_4159 at 7.667 kb on - strand at 7.682 kb on - strand at 7.706 kb on + strand at 8.007 kb on + strand, within Dshi_4160 at 8.035 kb on + strand, within Dshi_4160 at 8.095 kb on - strand, within Dshi_4160 at 8.257 kb on + strand, within Dshi_4160 at 8.575 kb on - strand, within Dshi_4160 at 8.580 kb on - strand, within Dshi_4160 at 8.590 kb on - strand, within Dshi_4160 at 8.656 kb on - strand at 8.656 kb on - strand at 8.656 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 5,722 + +4.3 5,722 + -1.7 5,730 - -0.7 5,934 + Dshi_4158 0.29 +0.3 6,023 + Dshi_4158 0.40 -1.5 6,064 - Dshi_4158 0.46 +0.0 6,330 - Dshi_4158 0.80 -1.2 6,571 - -1.2 6,586 + +1.7 6,689 + -1.5 7,129 + Dshi_4159 0.50 -0.4 7,147 - Dshi_4159 0.51 +3.7 7,667 - -0.2 7,682 - +0.3 7,706 + -2.2 8,007 + Dshi_4160 0.30 -2.2 8,035 + Dshi_4160 0.33 -1.7 8,095 - Dshi_4160 0.39 -1.7 8,257 + Dshi_4160 0.55 +1.2 8,575 - Dshi_4160 0.87 +0.0 8,580 - Dshi_4160 0.88 +0.4 8,590 - Dshi_4160 0.89 -3.0 8,656 - +1.6 8,656 - -0.1 8,656 - -2.3
Or see this region's nucleotide sequence