Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_4136

Experiment: m.b. Fusidic 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_4135 and Dshi_4136 overlap by 8 nucleotidesDshi_4136 and Dshi_4137 overlap by 92 nucleotides Dshi_4135: Dshi_4135 - hypothetical protein (RefSeq), at 66,718 to 68,040 _4135 Dshi_4136: Dshi_4136 - polysaccharide pyruvyl transferase (RefSeq), at 68,033 to 69,217 _4136 Dshi_4137: Dshi_4137 - hypothetical protein (RefSeq), at 69,126 to 70,604 _4137 Position (kb) 68 69 70Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 67.134 kb on + strand, within Dshi_4135at 67.188 kb on - strand, within Dshi_4135at 67.507 kb on + strand, within Dshi_4135at 67.575 kb on - strand, within Dshi_4135at 67.630 kb on + strand, within Dshi_4135at 68.060 kb on + strandat 68.204 kb on + strand, within Dshi_4136at 68.225 kb on - strand, within Dshi_4136at 68.587 kb on + strand, within Dshi_4136at 68.595 kb on - strand, within Dshi_4136at 68.637 kb on + strand, within Dshi_4136at 68.787 kb on + strand, within Dshi_4136at 68.795 kb on - strand, within Dshi_4136at 68.795 kb on - strand, within Dshi_4136at 68.853 kb on + strand, within Dshi_4136at 68.951 kb on - strand, within Dshi_4136at 68.981 kb on + strand, within Dshi_4136at 69.034 kb on - strand, within Dshi_4136at 69.061 kb on - strand, within Dshi_4136at 69.061 kb on - strand, within Dshi_4136at 69.129 kb on + strandat 69.137 kb on - strandat 69.137 kb on - strandat 69.170 kb on + strandat 69.303 kb on - strand, within Dshi_4137at 69.402 kb on + strand, within Dshi_4137at 69.408 kb on - strand, within Dshi_4137at 69.427 kb on + strand, within Dshi_4137at 69.434 kb on + strand, within Dshi_4137at 69.434 kb on + strand, within Dshi_4137at 69.436 kb on + strand, within Dshi_4137at 69.490 kb on + strand, within Dshi_4137at 69.515 kb on - strand, within Dshi_4137at 69.564 kb on + strand, within Dshi_4137at 69.572 kb on + strand, within Dshi_4137at 69.631 kb on + strand, within Dshi_4137at 69.640 kb on + strand, within Dshi_4137at 69.647 kb on - strand, within Dshi_4137at 69.648 kb on - strand, within Dshi_4137at 69.653 kb on + strand, within Dshi_4137at 69.655 kb on - strand, within Dshi_4137at 69.656 kb on - strand, within Dshi_4137at 69.661 kb on - strand, within Dshi_4137at 69.666 kb on + strand, within Dshi_4137at 69.678 kb on - strand, within Dshi_4137at 69.717 kb on + strand, within Dshi_4137at 69.723 kb on - strand, within Dshi_4137at 69.734 kb on + strand, within Dshi_4137at 69.734 kb on + strand, within Dshi_4137at 69.767 kb on + strand, within Dshi_4137at 69.805 kb on - strand, within Dshi_4137at 69.842 kb on + strand, within Dshi_4137at 69.850 kb on - strand, within Dshi_4137at 69.902 kb on + strand, within Dshi_4137at 69.920 kb on - strand, within Dshi_4137at 69.923 kb on + strand, within Dshi_4137at 69.936 kb on + strand, within Dshi_4137at 69.972 kb on - strand, within Dshi_4137at 70.005 kb on - strand, within Dshi_4137at 70.006 kb on + strand, within Dshi_4137at 70.069 kb on - strand, within Dshi_4137at 70.110 kb on - strand, within Dshi_4137at 70.142 kb on + strand, within Dshi_4137at 70.204 kb on + strand, within Dshi_4137at 70.212 kb on - strand, within Dshi_4137

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml
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67,134 + Dshi_4135 0.31 -0.3
67,188 - Dshi_4135 0.36 -1.4
67,507 + Dshi_4135 0.60 -2.2
67,575 - Dshi_4135 0.65 -3.7
67,630 + Dshi_4135 0.69 +1.0
68,060 + +0.2
68,204 + Dshi_4136 0.14 +0.3
68,225 - Dshi_4136 0.16 -1.4
68,587 + Dshi_4136 0.47 +2.2
68,595 - Dshi_4136 0.47 +0.6
68,637 + Dshi_4136 0.51 -0.6
68,787 + Dshi_4136 0.64 -0.1
68,795 - Dshi_4136 0.64 -3.3
68,795 - Dshi_4136 0.64 -0.6
68,853 + Dshi_4136 0.69 -2.0
68,951 - Dshi_4136 0.77 +3.3
68,981 + Dshi_4136 0.80 -0.7
69,034 - Dshi_4136 0.84 -1.8
69,061 - Dshi_4136 0.87 +2.8
69,061 - Dshi_4136 0.87 -1.0
69,129 + +2.4
69,137 - -2.5
69,137 - +0.2
69,170 + +0.8
69,303 - Dshi_4137 0.12 -1.3
69,402 + Dshi_4137 0.19 -0.2
69,408 - Dshi_4137 0.19 -0.7
69,427 + Dshi_4137 0.20 -0.5
69,434 + Dshi_4137 0.21 +0.6
69,434 + Dshi_4137 0.21 -0.5
69,436 + Dshi_4137 0.21 -0.1
69,490 + Dshi_4137 0.25 -1.3
69,515 - Dshi_4137 0.26 -0.4
69,564 + Dshi_4137 0.30 +0.0
69,572 + Dshi_4137 0.30 +1.5
69,631 + Dshi_4137 0.34 +2.9
69,640 + Dshi_4137 0.35 +0.6
69,647 - Dshi_4137 0.35 +1.3
69,648 - Dshi_4137 0.35 -0.4
69,653 + Dshi_4137 0.36 -2.7
69,655 - Dshi_4137 0.36 -1.0
69,656 - Dshi_4137 0.36 +1.6
69,661 - Dshi_4137 0.36 -2.9
69,666 + Dshi_4137 0.37 -1.0
69,678 - Dshi_4137 0.37 -1.0
69,717 + Dshi_4137 0.40 +0.7
69,723 - Dshi_4137 0.40 -0.2
69,734 + Dshi_4137 0.41 +3.2
69,734 + Dshi_4137 0.41 -2.5
69,767 + Dshi_4137 0.43 -2.2
69,805 - Dshi_4137 0.46 +2.3
69,842 + Dshi_4137 0.48 +0.6
69,850 - Dshi_4137 0.49 -0.4
69,902 + Dshi_4137 0.52 +0.8
69,920 - Dshi_4137 0.54 -1.4
69,923 + Dshi_4137 0.54 -0.1
69,936 + Dshi_4137 0.55 +0.3
69,972 - Dshi_4137 0.57 +0.5
70,005 - Dshi_4137 0.59 +1.1
70,006 + Dshi_4137 0.59 -3.1
70,069 - Dshi_4137 0.64 -2.7
70,110 - Dshi_4137 0.67 +0.9
70,142 + Dshi_4137 0.69 +0.4
70,204 + Dshi_4137 0.73 -2.0
70,212 - Dshi_4137 0.73 -1.4

Or see this region's nucleotide sequence